Locus 3435

Sequence ID X_DroMel_CAF1
Location 9,176,277 – 9,176,368
Length 91
Max. P 0.583077
window5624

overview

Window 4

Location 9,176,277 – 9,176,368
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 97.79
Mean single sequence MFE -18.70
Consensus MFE -19.10
Energy contribution -19.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 1.02
SVM decision value 0.10
SVM RNA-class probability 0.583077
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9176277 91 + 22224390
AAGUGGUUGCCAGUGGAUCAGUGUGGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGAAAGGAAGAAACGACGACGACAAAGUGG
..((.((((((...(((((.....))))).)))....((((........((.....))...(....).......))))))).))....... ( -19.70)
>DroSec_CAF1 4166 89 + 1
AAGUGGUUGCCAGUGGAUCAGU--GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG
..((.((((....((..((...--.((((...((....((....))....))..))))...(....)...))..)).)))).))....... ( -18.20)
>DroSim_CAF1 4175 89 + 1
AAGUGGUUGCCAGUGGAUCAGU--GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG
..((.((((....((..((...--.((((...((....((....))....))..))))...(....)...))..)).)))).))....... ( -18.20)
>consensus
AAGUGGUUGCCAGUGGAUCAGU__GGUUCGGGUGAAGGUCGAAAGAAGAGCGAAGAGCGAGCGGAAGGAAGAAACGACGACGACAAAGUGG
..((.((((((...(((((.....))))).)))....((((........((.....))...(....).......))))))).))....... (-19.10 = -19.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:22 2006