Locus 3432

Sequence ID X_DroMel_CAF1
Location 9,172,786 – 9,172,896
Length 110
Max. P 0.983496
window5621

overview

Window 1

Location 9,172,786 – 9,172,896
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.16
Mean single sequence MFE -50.34
Consensus MFE -22.56
Energy contribution -24.92
Covariance contribution 2.36
Combinations/Pair 1.24
Mean z-score -2.31
Structure conservation index 0.45
SVM decision value 1.95
SVM RNA-class probability 0.983496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9172786 110 + 22224390
AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAACCGC-------
....(((....((.((((.((...)))))).)).(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).)))....))).------- ( -46.90)
>DroVir_CAF1 659 120 + 1
AAAACUGGAACGCCACCGCGCAGCUGCGGCUGAUAGCCGCCAGAUCCGGAACUGGCAUUGCUGGAAGCUGGCACAUUGGCAAUGCUACCGCUGCUACCCGAAGCUGCAGCUGCACCAACA
.....(((...((....))((((((((((((..((((.(((((........)))))...((.((.(((..((......))...))).)))).)))).....)))))))))))).)))... ( -50.30)
>DroSec_CAF1 674 110 + 1
AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC-------
....((((......))))........((((((..(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).))).)))))).------- ( -52.20)
>DroSim_CAF1 674 110 + 1
AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG---CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC-------
....((((......))))........((((((..(((.((((.(..(((((((((..(..((((---(......)))))..)..)))))))))..).)))).))).)))))).------- ( -52.20)
>DroMoj_CAF1 724 117 + 1
AAGACUGCCACGCCGCCACGCAACUGGGGCUGAUAGCCGCCGGACACAGGGCCGGCAUUGCUGG---UUGGCAUGUUGGCGAUGCUGCCGCUGCUGCCAGACUGGGCGCUCGCUCCGGCG
....(((.((.(((.(((......)))))))).))).(((((((.....(((.(((((((((..---(......)..))))))))))))((.((.(((......)))))..))))))))) ( -50.10)
>consensus
AAUACGGCCACUCCGCCGCGCAAUGCCGGCUGAUAGCCGCCGCCUCCAGUGGCGGGAUUACUGG___CUGUCACGCUAGCUAAACUGCCACUGCUGCCGGCUGCUCCAGCCGC_______
....((((......))))........((((((...((.((((....(((((((((.....((((...........)))).....)))))))))....)))).))..))))))........ (-22.56 = -24.92 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:19 2006