Locus 3424

Sequence ID X_DroMel_CAF1
Location 9,153,505 – 9,153,623
Length 118
Max. P 0.925855
window5601

overview

Window 1

Location 9,153,505 – 9,153,623
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -32.38
Consensus MFE -22.83
Energy contribution -24.08
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -2.48
Structure conservation index 0.70
SVM decision value 1.17
SVM RNA-class probability 0.925855
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9153505 118 - 22224390
ACGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGGCGGCGAAAGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA
.((((((......(((...(((((((((...))))))))).)))....))))))(..((....))..).(((((.........))))).............(((((......))))). ( -36.00)
>DroSec_CAF1 6241 118 - 1
ACGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGUCGGCGAAUGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA
..(((.((((....((((.(((((((((...))))))))).(((.((......)).)))..))))..))))...)))...(((((.........)))))..(((((......))))). ( -31.50)
>DroEre_CAF1 6406 100 - 1
AAGUUUCCCGCUCGGCAUUUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGCUGC------------------CAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA
..(((((......(((...(((((((((...))))))))).)))....)))))(((((------------------...((((((.((............))))))))...))))).. ( -26.50)
>DroYak_CAF1 6479 118 - 1
AAGUUAGCCGCUCGGCAUACGAAUACCUCCUGGGCAUUUGGGCCAAUUGAAACGGUGGCGAAAGCAACGGGCACAACAAAUUGGCGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA
..(((((((((((((..............)))))).((((((((((((....(.((.((....)).)).)........))))))).)))))..........))))))).......... ( -35.54)
>consensus
AAGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGGCGGCGAAAGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA
.........(((((((...(((((((((...))))))))).))).............((....))...))))........(((((.........)))))..(((((......))))). (-22.83 = -24.08 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:01 2006