Locus 3422

Sequence ID	X_DroMel_CAF1
Location	9,147,297 – 9,147,404
Length	107
Max. P	0.951883

overview

Window 6

Location	9,147,297 – 9,147,404
Length	107
Sequences	4
Columns	111
Reading direction	reverse
Mean pairwise identity	95.26
Mean single sequence MFE	-60.50
Consensus MFE	-59.06
Energy contribution	-59.12
Covariance contribution	0.06
Combinations/Pair	1.05
Mean z-score	-1.99
Structure conservation index	0.98
SVM decision value	1.42
SVM RNA-class probability	0.951883
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9147297 107 - 22224390
----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCAGCGGGUGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGUUGCAGGUG
----.((.(((....(((((.((((((((((((((((((..((((..(((...(((...)))...)))..))))..)))))))))))...)))))))))).)).))))).. ( -57.80)
>DroSec_CAF1 106 107 - 1
----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGCUGCAGGUG
----.((.(((....(((((.((((((((((((((((((..(((((.(((...(((...)))...))).)))))..)))))))))))...)))))))))).)).))))).. ( -62.70)
>DroEre_CAF1 88 111 - 1
CAUGCCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGUGGUGGCAAGGCCAUCUGGUGCUGCAGGUG
...(((..(((....(((((.(((((((((((..(((((..(((((.(((...(((...)))...))).)))))..)))))..))))...)))))))))).)).)))))). ( -61.70)
>DroYak_CAF1 105 107 - 1
----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGUGGCGGUAAGGCCAUCUGGUGCUGCAGGUG
----.((.(((....(((((.(((((((..(((((((((...((((........))))((((((((.....)))))))))))))))))..)))))))))).)).))))).. ( -59.80)
>consensus
____CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGCUGCAGGUG
.....((.(((....(((((.((((((((((((((((((..(((((.(((...(((...)))...))).)))))..)))))))))))...)))))))))).)).))))).. (-59.06 = -59.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006