Locus 3421

Sequence ID X_DroMel_CAF1
Location 9,147,190 – 9,147,293
Length 103
Max. P 0.906753
window5595

overview

Window 5

Location 9,147,190 – 9,147,293
Length 103
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -48.00
Consensus MFE -36.24
Energy contribution -38.64
Covariance contribution 2.40
Combinations/Pair 1.13
Mean z-score -1.83
Structure conservation index 0.76
SVM decision value 1.05
SVM RNA-class probability 0.906753
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9147190 103 - 22224390
UGGGCGUGGUGGGCGUGCGGAUGAUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCCAUUUGUCCAUUCGCCGGCGCCCAUCAUUUCGGCUG---------------
..((((((((((((((.(((..(((((((((((((((........))))))))((....))...........)))))))..))))))))))))))....))).--------------- ( -49.70)
>DroPse_CAF1 1649 115 - 1
UGGGCGUGGUGGGCGUGUGGAUGGUGGGCAUGGCUGUGGUAGUAGGCGGCUGCGGAGCUCGAGGAUCC---CGUCCAUUCCCCGGCGCCCAUCAGAUCGGUUUCUGCAGAGAGAGAGA
(((((((.(.(((...(((((((((((((.(.((.((.((.....)).)).)).).)))))......)---))))))).)))).))))))).....((..(((((....)))))..)) ( -47.60)
>DroSec_CAF1 1 101 - 1
UGGGCGUGGUGGGCGUGCGGGUGGUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCCAUUCGUCCAUUCGCCGGCGCCCAUCAUUUCGGC-----------------
..((.(((((((((..((.((((((((((((((((((........)))))))).......(((......)))))))).))))).))))))))))).))...----------------- ( -48.70)
>DroEre_CAF1 1 83 - 1
UGU---------------GGAUGGUGGGCGUGGCUGUGGUAAUAUGCAGCCGCCGAGCUCGAGGAUCC---CGUCCAUUCGCCGGCGCCCAUCAUGUCGGC-----------------
.((---------------.((((((((((..(((((((......)))))))((((.((....((((..---.))))....))))))))))))))..)).))----------------- ( -39.50)
>DroYak_CAF1 1 100 - 1
UGUGCGUGGUGGGCGUGCGGGUGGUGGGCGUGGCUGUGGUAAUAGGCAGCCGCCGAACUCGAGGAUCC---CGUCCAUUCGCCGGCGCCCAUCAUGUCGGCUC---------------
.(((((((((((((((((((((((((((.((((((((........))))))))((....)).....))---)).))))))))..)))))))))))))..))..--------------- ( -54.50)
>consensus
UGGGCGUGGUGGGCGUGCGGAUGGUGGGCGUGGCUGUGGUAGUAGGCAGCCGCCGAACUCGAGGAUCC___CGUCCAUUCGCCGGCGCCCAUCAUGUCGGCU________________
.....(((((((((((.(((..(((((((((((((((........))))))))((....))...........)))))))..))))))))))))))....................... (-36.24 = -38.64 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:56 2006