Locus 3420

Sequence ID X_DroMel_CAF1
Location 9,134,017 – 9,134,114
Length 97
Max. P 0.721958
window5594

overview

Window 4

Location 9,134,017 – 9,134,114
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 81.91
Mean single sequence MFE -26.43
Consensus MFE -23.30
Energy contribution -24.14
Covariance contribution 0.84
Combinations/Pair 1.21
Mean z-score -1.57
Structure conservation index 0.88
SVM decision value 0.40
SVM RNA-class probability 0.721958
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9134017 97 - 22224390
AUUCUUUGGGCUCGCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUUAAUUUUCAGAAAUGUUAUAUAGUCAACC
.((((((((((.((((...((((((((((........))))))))))))).).))))))))))(.((........((....))......)).).... ( -28.14)
>DroSec_CAF1 2717 96 - 1
CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCCAC-AAUGUUAUAUGGUAAACU
((...((((((.(....((((((((((((........))))))))))))..).))))))((((((.....))))))..-..........))...... ( -24.80)
>DroSim_CAF1 3233 96 - 1
CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGAGCUCGAGGAAGUCUUCAAUUUCCAC-AAUGUUAUAUGGUAAACU
((...((((((((....((((((((((((........))))))))))))..))))))))((((((.....))))))..-..........))...... ( -29.00)
>DroEre_CAF1 5860 80 - 1
CUUCCUGGGGCUCUUAAUAAUCGGCAGUUGGCAAAGGAAGUGCUGUUUGCAGUGCCCGAGGAAGUCCUCAAUUUCCAC-AA----------------
((((((.((((.(((((....(((((.((........)).))))).))).)).)))).))))))..............-..---------------- ( -27.00)
>DroYak_CAF1 4065 94 - 1
CCUCUUUGGGCUCCUAAUAAUCGGCCCUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGGGAAGGUCAACAAUUUCCAC-AAUGUUGU--AGUAAACU
(((..((((((.(....((((((((((((....))))....))))))))..).))))))..))).(((((........-..))))).--........ ( -23.20)
>consensus
CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCCAC_AAUGUUAUAUAGUAAACU
(((((((((((.(....((((((((((((........))))))))))))..).)))))))))))................................. (-23.30 = -24.14 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:55 2006