| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,131,635 – 9,131,731 |
| Length | 96 |
| Max. P | 0.572432 |
| Location | 9,131,635 – 9,131,731 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 93.75 |
| Mean single sequence MFE | -47.08 |
| Consensus MFE | -45.35 |
| Energy contribution | -45.48 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9131635 96 + 22224390 CAACGGCUGGAGCAGCUCCACCGGCGACUUCAAGGGCAUCACAGCGGUGGCGACGGCCACUGGCGGCGGCGUAGGUGGUGCCACCCAGGGCGCCAC ....((.(((((...)))))))((((.(((....((((((((..(((((((....)))))))(((....)))..))))))))....))).)))).. ( -45.80) >DroSec_CAF1 492 96 + 1 CAACGGCUGGAGCAGCUCCACCGGCGACUUCAAGGGCAUCACGGCGGUGGCGACUGCCACUGGCGGCGGCGCAAGUGGUGCCACCCAGGGCGCCAC ....((.(((((...)))))))((((.(((....((((((((..(((((((....)))))))(((....)))..))))))))....))).)))).. ( -47.50) >DroEre_CAF1 3631 96 + 1 CAACGGCUGGAGCAGCUCCACCGGCGACUUCAAGGGCAUCACAGCGGUGGCCACGGCCACUGGCGGAGGCGCUGGUGGCGCCACCCAGGGCGCCAC ...(((.(((((...))))))))(((.((((....((......))((((((....))))))...)))).)))..((((((((......)))))))) ( -47.20) >DroYak_CAF1 1787 96 + 1 CAAUGGCUGGAGCAGCUCCACCGGCGACUUCAAGGGCAUCACAGCGUUGGCCACCGCCACCGGCGGCGGCGCAGGUGGUGCCACCCAGGGCGCCAC ....((.(((((...)))))))((((.(((....((((((((.((((((.((.(((....))).))))))))..))))))))....))).)))).. ( -47.80) >consensus CAACGGCUGGAGCAGCUCCACCGGCGACUUCAAGGGCAUCACAGCGGUGGCCACGGCCACUGGCGGCGGCGCAGGUGGUGCCACCCAGGGCGCCAC ....((.(((((...)))))))((((.(((....((((((((..(((((((....)))))))(((....)))..))))))))....))).)))).. (-45.35 = -45.48 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:51 2006