Locus 3411

Sequence ID X_DroMel_CAF1
Location 9,127,047 – 9,127,147
Length 100
Max. P 0.585777
window5578

overview

Window 8

Location 9,127,047 – 9,127,147
Length 100
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 75.74
Mean single sequence MFE -18.30
Consensus MFE -14.02
Energy contribution -13.66
Covariance contribution -0.36
Combinations/Pair 1.29
Mean z-score -0.97
Structure conservation index 0.77
SVM decision value 0.10
SVM RNA-class probability 0.585777
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9127047 100 - 22224390
ACCUAUC---AUCCAUUUAAAUCCGUGAAUCAAUGUGGUUUUUGCCACUUCUGCUAUCUUUGCAGUUUGUGCACCUUAUGUAAAUACGGCUCUAUGUAGUG----UU
.......---..............(((...(((.(((((....)))))..((((.......)))).)))..)))........(((((.((.....)).)))----)) ( -17.60)
>DroSec_CAF1 2859 98 - 1
ACAUAUCAUCAUCCAUGUAAAUCCAUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUUCAC-UUAUGUAAAUACGGCUCU----AGUG----UU
(((((........((((......)))).......(((((....)))))..((((.......)))).........-.))))).(((((......----.)))----)) ( -17.00)
>DroSim_CAF1 944 98 - 1
ACAUAUCAUCAUCCAUGUAAAUCCGUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUUCAC-UUAUGUAAAUACGGCUCU----AGUG----UU
(((((.(((.....))).......(((((.(((.(((((....)))))..((((.......)))).))))))))-.))))).(((((......----.)))----)) ( -19.70)
>DroEre_CAF1 2891 92 - 1
--AAAUAAUACUAUAUGUAAAUCUGUGAAUCAAUGUGGCUUGUGCCACUUCUGCUACCCUUGCAGUU----AA-----UUUAAAUACGGUUCU----AGAACACUAG
--......(((.....)))..((((.(((((...(((((....)))))..((((.......))))..----..-----.........))))))----)))....... ( -21.50)
>DroYak_CAF1 2927 84 - 1
--AUCUCAUCAUCUCUGUAAAUCAGUGAAUCAAUGUGGUUUGUGCUACUUCUGCUACCCUUGCAGCUUGUGCA-----UUUAAAUAGUG--CU--------------
--.........((.(((.....))).))......(((((....)))))..((((.......)))).....(((-----((.....))))--).-------------- ( -15.70)
>consensus
ACAUAUCAUCAUCCAUGUAAAUCCGUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUGCAC_UUAUGUAAAUACGGCUCU____AGUG____UU
......................(((((.......(((((....)))))..((((.......))))...................))))).................. (-14.02 = -13.66 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:40 2006