Locus 3400

Sequence ID X_DroMel_CAF1
Location 9,101,855 – 9,101,969
Length 114
Max. P 0.561850
window5564

overview

Window 4

Location 9,101,855 – 9,101,969
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -53.55
Consensus MFE -35.33
Energy contribution -35.00
Covariance contribution -0.33
Combinations/Pair 1.35
Mean z-score -1.45
Structure conservation index 0.66
SVM decision value 0.06
SVM RNA-class probability 0.561850
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9101855 114 - 22224390
CGAUUGGGCCUGGCUGGGCUCCAGCUGGGGCU------CCUCGCGUUCCUCCUGUUUAAGCUCGUCCGGCGUGGCUGGCAGCUUUAGUGAGCCGGCCUCAAUCCUAGCCAGCUUCAGCAG
(((..((.((..(((((...)))))..)).))------..)))........(((((.(((((.((..((.(.(((((((.((....))..))))))).)...))..)).))))).))))) ( -48.70)
>DroPse_CAF1 9021 120 - 1
CGACUGGGCCAAGCUGGGCUGCUCCUGUAGCUGCAGCUGACCUUCCUCCUGCUGCUUGAGCUCGUCGGGGGUGGCUGGCAGCUUGAGGGAGCUGGCCUCGACGCGGGCCAGCCUAAGCAG
............((((((((((((((..((((((((((.((((((..(..(((.....)))..)..)))))))))).))))))...)))))).(((((......)))))))))).))).. ( -58.40)
>DroSec_CAF1 8880 114 - 1
CGAUUGGGCCUGGCUGGGCUCCAGCUGGGGCU------CCUUGCUUUCCUGCUGUUUAAGCUCGUCCGGUGUGGCUGGCAGCUUCAGUGAGCCGACUUCAAUCCUAGCCAGUUUCAGCAG
.(.((((..((((((((((((..(((((((((------((..(((..((.(((.....)))......))...))).)).))))))))))))))(....).....)))))))..))))).. ( -43.80)
>DroEre_CAF1 8589 114 - 1
CGAUUGGGCCUGGCUGGGCUCCAGCUGGGGCU------CCUCGCGUUCCUGCUGCUUGAGCUCGUCCGGCGUGGCUGGCAGCUUCAGGGAGCUGGCCUCAAUUCUGGCCAGCUUCAGCAG
(((..((.((..(((((...)))))..)).))------..))).....((((((((((((((.(.(((((...))))))))).)))))(((((((((........))))))))))))))) ( -60.20)
>DroYak_CAF1 8996 114 - 1
CGAUUGCGCCUGGCUGGGCUCCUGCUGGGGCU------CUUCGCGUUCCUGCUGCUUAAGCUCGUCCGGCGUGGCGGGCAGCUUCAGUGAGCCGGCCUCAAUCCUGGCCAGCUUCAGCAG
.......((((....))))..(((((((((((------....(.(((((((..(((...(((((((......))))))))))..))).)))))((((........))))))))))))))) ( -51.80)
>DroPer_CAF1 9860 120 - 1
CGACUGGGCCAAGCUGGGCUGCUCCUGUAGCUGCAGCUGACCUUCCUCCUGCUGCUUGAGCUCGUCGGGGGUGGCUGGCAGCUUGAGGGAGCUGGCCUCGACGCGGGCCAGCCUAAGCAG
............((((((((((((((..((((((((((.((((((..(..(((.....)))..)..)))))))))).))))))...)))))).(((((......)))))))))).))).. ( -58.40)
>consensus
CGAUUGGGCCUGGCUGGGCUCCAGCUGGGGCU______CCUCGCGUUCCUGCUGCUUAAGCUCGUCCGGCGUGGCUGGCAGCUUCAGGGAGCCGGCCUCAAUCCUGGCCAGCUUCAGCAG
.(((((((((.((((.((((((....))))))...........((((...((((((..((((((.....)).))))))))))...)))))))))))).))))).......((....)).. (-35.33 = -35.00 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:26 2006