Locus 34

Sequence ID X_DroMel_CAF1
Location 133,067 – 133,176
Length 109
Max. P 0.992625
window41

overview

Window 1

Location 133,067 – 133,176
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -35.56
Consensus MFE -32.66
Energy contribution -32.62
Covariance contribution -0.04
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.92
SVM decision value 2.34
SVM RNA-class probability 0.992625
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 133067 109 - 22224390
CAGCAAUAUUGACGCAUGGGCGCCGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC
..(((.((((...(((..(((((.(((.........))).)))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -31.40)
>DroSec_CAF1 5354 109 - 1
CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC
..(((.((((...(((..(((((((((.........)))))))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -35.30)
>DroSim_CAF1 5116 109 - 1
CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC
..(((.((((...(((..(((((((((.........)))))))))((((.((.((((((((....)))))))))).))))............)))..)))).))).... ( -35.30)
>DroEre_CAF1 4689 109 - 1
CAGCGAUGUCGACGCAUGGGCGCAGUAUUGAUUUUUCACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCGGCCUGAUAUUGCCUUC
..((((((((((((..(.((((((((...((....)))))))))).))))).(((((((((....)))))))))((((.............))))..)))))))).... ( -39.62)
>DroYak_CAF1 4886 109 - 1
CAGCGAUGUCGACGCAUGGGCGCAGUAUUGAUUUUUCACUGCGUCGACGUCGGAAUCACUCCGUGGGGUGGUUUGUCGUUCCUUCUCUUUUCGCCCAGAUAGUGCCUUC
...((((((((((((....))(((((...((....)))))))))))))))))(((((((((....)))))))))................................... ( -36.20)
>consensus
CAGCGAUAUUGACGCAUGGGCGCAGUAUUGAUUUUUUACUGCGUCGACGUCGGAAUCACUCCAUGGGGUGGUUUGUCGUUCUUUCUCUUUUCUGCCAGAUAGUGCCUUC
..(((.((((((((..(.(((((((((.........))))))))).))))).(((((((((....))))))))).......................)))).))).... (-32.66 = -32.62 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006