| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,100,848 – 9,100,955 |
| Length | 107 |
| Max. P | 0.720107 |
| Location | 9,100,848 – 9,100,955 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.82 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -12.31 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9100848 107 - 22224390 UGUCUGUC------UAGCAUUUACAUGUUAUAGUAGUCGACAAACUCGACACAUCUGGGACGCCUAUUAUAGCAGAUUGGAUCCAAUCUCACUGGCUUCCACUUCUUCUUUUU .....((.------.(((.......(((((((((((((((.....)))))......((....))))))))))))(((((....)))))......)))...))........... ( -23.00) >DroVir_CAF1 8978 97 - 1 -------------UUCGUAAUUACAUAUGAUAGUAGUCGACAAAUUCGACGGAUCUACGACGCCUA---UAGCAGAUUGGAUCCAAUCUGACUGGCUUCCACUUCUUCUUUUU -------------.(((((..(((........)))(((((.....))))).....))))).(((..---...(((((((....)))))))...)))................. ( -24.80) >DroPse_CAF1 8106 104 - 1 CAGCUUUC------UUUGCUUUACAUAUUACAGUAGUCGACAAACUCGACGGAUCUAGGACGCCUA---UAGCAGAUUGGAUCCAAUCUCACUGGCUUCCACUUCUUCUUUUU .(((....------...)))..........((((.(((((.....)))))((((((((...((...---..))...))))))))......))))................... ( -23.60) >DroGri_CAF1 10140 96 - 1 -----------UUUUCAUAAUUACAUAUUAUAGUAGUCGACAAAUACGACAGGUCUACGACGACUA---UAGCAGAUUGGAUCCAAUCUUACUGGCAUCCACUUCUU---UUU -----------................(((((((.((((.......))))..(((...))).))))---))).(((.((((((((.......))).)))))..))).---... ( -18.70) >DroWil_CAF1 8563 101 - 1 CAUCUUCU------UUUGCUCUACAUAUUAUAGUAGUCGACAAAUUCGACGGAUCUAGGAAGCCUA---UAGCAGACUCGAUCCAAUCUAACUGGUUUCCACUUCU---UUUU ........------................((((.(((((.....)))))(((((.((...((...---..))...)).)))))......))))............---.... ( -17.80) >DroMoj_CAF1 8330 110 - 1 AAUUUUUAUAGUUUUCGUAAUUACAUAUUAUAGUAGUCGAGAAAUUCGACGGAUCUACGACGACUA---UAGCAGAUUGGAUCCAAUCUGACUGGCUUCCACUUCUUCUUCUU .....((((((((.(((((..(((........)))((((((...)))))).....))))).)))))---)))(((((((....)))))))....................... ( -27.40) >consensus _AUCUUU_______UCGUAAUUACAUAUUAUAGUAGUCGACAAAUUCGACGGAUCUACGACGCCUA___UAGCAGAUUGGAUCCAAUCUCACUGGCUUCCACUUCUUCUUUUU ..............................((((.(((((.....)))))(((((((....((........))....)))))))......))))................... (-12.31 = -13.07 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:25 2006