| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,076,889 – 9,077,001 |
| Length | 112 |
| Max. P | 0.540646 |
| Location | 9,076,889 – 9,077,001 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.33 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9076889 112 - 22224390 ----UUUCU---UCCUUGCAGAUGGGUCUGUCGCUGGAUAAGACCACUAUUGACCAGCUUAAUCCCUAUUUGGACUCGCAUCAAAACAAAUGCAUUCUCGAGGAAUCACCUAAAUCCCA ----....(---((((((((((((((..(...(((((.(((........))).)))))...)..)))))))).....((((........)))).....))))))).............. ( -28.70) >DroGri_CAF1 8920 119 - 1 AUAUUUUAUUGGUGAUUGCAGUUUGGUCUUUCGUUGGACAAGACAACCAUUGAUCAGCUGAAUCCCUACCUGGACUCGCAUCAAAAUAAGUGCAUACUGGAGGAGCCGCCGUCCAAUCA ..........((.((((.(((((.((((..(.((((.......)))).)..)))))))))))))))....(((((..((((........)))).....((.(....).))))))).... ( -31.60) >DroSim_CAF1 8289 112 - 1 ----UUUCU---UUCUUGCAGAUGGGUCUGUCGCUGGACAAGACCACUAUUGACCAGCUGAAUCCCUACUUGGACUCGCAUCAAAACAAAUGCAUCCUCGAGGAAUCACCUAAAUCCCA ----....(---((((((..((((.((.(((.(((((.(((........))).))))).((.(((......))).))........))).)).))))..))))))).............. ( -27.10) >DroEre_CAF1 6265 112 - 1 ----UUUCU---CCCUUGCAGAUGGGCCUGUCGCUGGACAAGACCACUAUUGACCAGCUGAACCCCUACUUGGACUCGCAUCAAAACAAAUGCAUUUUGGAGGAAUCACCAAAAUCCCA ----(((((---((....(((.((((....(((((((.(((........))).))))).))...)))).))).....((((........)))).....))))))).............. ( -27.20) >DroYak_CAF1 4299 112 - 1 ----UUUCU---CUCUUGCAGAUGGGUCUGUCGCUGGACAAGACCACUAUUGACCAGCUGAAUCCCUACUUGGACUCGCAUCAAAACAAAUGCAUUUUGGAGGAAUCACCUAAAAACCA ----(((((---((..((((..((((((((((....))).)))))....((((...((.((.(((......))).)))).))))..))..))))....))))))).............. ( -29.10) >DroPer_CAF1 4830 104 - 1 ---------------GUGCAGUUCGGUCUCUCGCUGGACAAGACAACCAUUGACCAAUUGAAUCCCUAUCUGGACUCGCAUCAAAACAAAUGCAUACUCGAGGAGCCGCCAAAUAUGCA ---------------.((((...((((..((((.(((.(((........))).)))...((.(((......))).))((((........)))).....))))..)))).......)))) ( -25.10) >consensus ____UUUCU___UCCUUGCAGAUGGGUCUGUCGCUGGACAAGACCACUAUUGACCAGCUGAAUCCCUACUUGGACUCGCAUCAAAACAAAUGCAUUCUCGAGGAAUCACCUAAAACCCA ......................(((((...(((((((.(((........))).))))).((.(((......))).))((((........)))).........))...)))))....... (-17.16 = -17.33 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:20 2006