Locus 3390

Sequence ID X_DroMel_CAF1
Location 9,069,275 – 9,069,368
Length 93
Max. P 0.532482
window5550

overview

Window 0

Location 9,069,275 – 9,069,368
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 90.80
Mean single sequence MFE -17.93
Consensus MFE -13.21
Energy contribution -13.01
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value -0.00
SVM RNA-class probability 0.532482
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9069275 93 - 22224390
AGAACUGAAAACCAAACCCAAUCUAUAAUUCGCUAAUGAAUAUUAUGUAUGUUCGCGGUUCUCACGCUUUU-CAUUUGGCGUGAAAAUUAAGCA
.((((((..(((........((.((((((...(....)...)))))).)))))..))))))(((((((...-.....))))))).......... ( -18.50)
>DroSec_CAF1 2435 91 - 1
AGAAUUGAAAACCAAAACCAAUGUAUAAUUCGCUAAUGAAU--UAU-UAAGUUCGCGGUUCACACGCUUUUCCAUUUGGCGUGAAAAUUAAGCA
.((((((..(((....((....))((((((((....)))))--)))-...)))..)))))).((((((.........))))))........... ( -17.20)
>DroSim_CAF1 2854 91 - 1
AGAACUGAAAACCAAAACCAAUGUAUAAUUCGCUAAUGAAU--UAU-UAAGUUCGCGGUUCACACGCUUUUCCAUUUGGCGUGAAAAUUAAGCA
.((((((..(((....((....))((((((((....)))))--)))-...)))..)))))).((((((.........))))))........... ( -19.60)
>DroEre_CAF1 5750 91 - 1
AGAACUGUAGCCCAAAACCAAUCAAUAAUUCGCUAAUGAAUA-AAU-UAAGUUCUCGGUUCACACGCUUUU-CAUUUGGCGUGAAAAUUAAGCA
.((((((((((....................))))..((((.-...-...)))).)))))).((((((...-.....))))))........... ( -17.45)
>DroYak_CAF1 2882 91 - 1
AGAACUGAACCCCAAAACCAAUCUAUAAUUCGCUAAUGAAUA-UAU-AAAGUGCUCGGUUCACACGCUUUU-CAUUUGGCGUGAAAAUUAAACA
.(((((((..........((...(((((((((....))))).-)))-)...)).))))))).((((((...-.....))))))........... ( -16.90)
>consensus
AGAACUGAAAACCAAAACCAAUCUAUAAUUCGCUAAUGAAUA_UAU_UAAGUUCGCGGUUCACACGCUUUU_CAUUUGGCGUGAAAAUUAAGCA
.((((((..(((...............(((((....))))).........)))..)))))).((((((.........))))))........... (-13.21 = -13.01 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006