| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,059,671 – 9,059,764 |
| Length | 93 |
| Max. P | 0.664347 |
| Location | 9,059,671 – 9,059,764 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.30 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.28 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9059671 93 + 22224390 --UACAUAUAUCCGCGACUUAUGUGCUAACAUAAAACAGAUGACGAACGGCAGCUGUGACUGCCAAUU-UCGCAUCAAAAACAAAACUCGAAAAGG--------- --.........((.(((.((((((....))))))....((((.((((.(((((......)))))...)-)))))))...........)))....))--------- ( -22.40) >DroSec_CAF1 7870 93 + 1 --UACAUAUAUCCGCGACUUAUGUGCUAACAUAAAACAGAUGACGAACGGCAGCUGUGACUGCCAAUU-UCGCAUCAAAAACAAAACUCGAAAAGG--------- --.........((.(((.((((((....))))))....((((.((((.(((((......)))))...)-)))))))...........)))....))--------- ( -22.40) >DroSim_CAF1 7940 93 + 1 --UACAUAUAUCCGCGACUUAUGUGCUAACAUAAAACAGAUGACGAACGGCAGCUGUGACUGCCAAUU-UCGCAUCAAAAACAAAACUCGAAAAGG--------- --.........((.(((.((((((....))))))....((((.((((.(((((......)))))...)-)))))))...........)))....))--------- ( -22.40) >DroYak_CAF1 8122 95 + 1 CCAAUAUAUAUCCGCGACUUAUGUGCUAACAUAAAACAGAUGACGAACGGCAGCUGUGACUGCCAAUU-UCGCAUCAAAAACAAAACUCGAAAUGG--------- ..............(((.((((((....))))))....((((.((((.(((((......)))))...)-)))))))...........)))......--------- ( -21.40) >DroAna_CAF1 8146 91 + 1 --GUGAUCCAUCCGGGACUCAUGUGCUAACAUAAAGCAGAUGACGACCAGCAGCUGCCCCUGCCAAUUUUCGCCUCACAAA-ACAACUCAAAA--G--------- --((((..(....((...((((.((((.......)))).))))...)).((((......))))........)..))))...-...........--.--------- ( -20.00) >DroPer_CAF1 10045 102 + 1 --AACGCAGAUCCGCGACUUAUGUGUUAACAUAAAACAGAUGACGAACGGCAGCUGCGACUGCCAAUU-UCGCUUCAAAACUUUGAGUGGAGGAGGAAGGCGAAG --..(((((..(((....((((.((((.......)))).))))....)))...)))))..((((..((-((.((((...((.....)).)))).))))))))... ( -27.90) >consensus __UACAUAUAUCCGCGACUUAUGUGCUAACAUAAAACAGAUGACGAACGGCAGCUGUGACUGCCAAUU_UCGCAUCAAAAACAAAACUCGAAAAGG_________ ..................((((((....))))))....((((.(((..(((((......))))).....)))))))............................. (-15.62 = -16.28 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:11 2006