Locus 3388

Sequence ID X_DroMel_CAF1
Location 9,051,710 – 9,051,821
Length 111
Max. P 0.926418
window5548

overview

Window 8

Location 9,051,710 – 9,051,821
Length 111
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 73.21
Mean single sequence MFE -48.40
Consensus MFE -21.50
Energy contribution -22.53
Covariance contribution 1.03
Combinations/Pair 1.33
Mean z-score -2.16
Structure conservation index 0.44
SVM decision value 1.18
SVM RNA-class probability 0.926418
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9051710 111 - 22224390
GAGGCCGAGAAGCAGCGCAAGCUGGCCGAACUGCAGGCCAAGGCCGCCGAGGCUGACAAGUUGCUCGAGGUCCUGCAGAAGGAGCAGUCGGAGCAGUCGGAG-CAGGCCGAG-
..((((......((((....)))).((((.((((.(((....))).((((((((....))))......(.((((.....)))).)..)))).))))))))..-..))))...- ( -49.70)
>DroPse_CAF1 73 96 - 1
GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUCCAGGCGAAGGCAGCCGAGGCGGACAAGCUACUGGCCGCCCUUGAGGAGG---------------CGGCU-CGGGCCGAG-
..((((..((..((((....))))((((..((((...(((.(((.((((.(((......)))..)))).))).))).)))).---------------)))))-).))))...- ( -48.30)
>DroEre_CAF1 87 103 - 1
GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUGCAGGCCAAGGCCGCCGAGGCUGACAAGCUGCUCGAGGUUCUCGAGAAGGAGCAGG---------CCGAG-CAGGCGGAGC
..((((......((((....))))((......)).))))....(((((..((((....))))(((((..(((((......)))))...---------.))))-).)))))... ( -45.80)
>DroMoj_CAF1 55 102 - 1
CUGGCCGAAAAGCAGCGCCAGCUGGCCGAGCUGGAGCAGAAGGCGGCCGAGGCGGACAAGCUGCUAGCCACGCUAGCCGUG--GCCGA---CGA-GUCCGCUGCAGGC-----
..(((((.....(.((.((((((.....)))))).)).)....)))))(.(((((((.....((((((...))))))(((.--....)---)).-))))))).)....----- ( -46.40)
>DroAna_CAF1 79 99 - 1
GAGGCCGAGAAGCAGCGUAAGCUGGCGGAGCUCCAGGCGAAGGCCGCCGAGGCGGACAAGAUCCUGGCGGCCUUCGAGGCUGAGCAAG---------CGGCC-GAGGCG----
..((((......((((....))))((...((((.((.(((((((((((.(((..........))))))))))))))...))))))..)---------)))))-......---- ( -52.20)
>DroPer_CAF1 80 96 - 1
GAGGCCGAGAAGCAGCGCAAGUUGGCCGAGCUCCAGGCGAAGGCAGCCGAGGCGGACAAGCUACUGGCCGCCCUCGAGGAGG---------------CGGCU-CGGGCCGAG-
..((((..((..((((....))))((((..((((...(((.(((.((((.(((......)))..)))).))).))).)))).---------------)))))-).))))...- ( -48.00)
>consensus
GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUCCAGGCGAAGGCCGCCGAGGCGGACAAGCUGCUGGCCGCCCUCGAGGAGG_GCAG__________CGGCU_CAGGCCGAG_
...(((......((((....))))(((........)))((.((((((...(((......)))....)))))).))..............................)))..... (-21.50 = -22.53 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:10 2006