| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,022,039 – 9,022,141 |
| Length | 102 |
| Max. P | 0.815107 |
| Location | 9,022,039 – 9,022,141 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.71 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -13.79 |
| Energy contribution | -14.90 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9022039 102 - 22224390 UUUGUUGUUUUUUAUUUUUCAUUUCAUGCUUUCAUUACCAUCGAUUUAUGUUAGUUACUUGUGGCUCUUGUCUCGGAAUUGAACUAAAUGCAAGUAUGAUAC .......................((((((((.((((....(((((((..((.....)).((.(((....))).)))))))))....)))).))))))))... ( -17.30) >DroEre_CAF1 10131 87 - 1 AUU----UUU----AUUU---UUUCAUGCUUUCAUUACCUUCCAUUUGUGU----UACUUGUGGCUCUUGUCUCGGAAUUAAACUAAAUGCACGUAUGAUAC ...----...----....---..((((((...((((.....((((..(...----..)..)))).(((......))).........))))...))))))... ( -10.30) >DroYak_CAF1 10441 91 - 1 CUU----UUUCAUGCUUU---UUUCAUACUUUCAUUACCUUCGAUUUAUGU----UACUUGUGGCUCUUGUCUCGGAAUUGAACUAAAUGCAAGUAUGAUAC ...----...........---..((((((((.((((...((((((((....----....((.(((....))).))))))))))...)))).))))))))... ( -17.70) >consensus AUU____UUU__U_AUUU___UUUCAUGCUUUCAUUACCUUCGAUUUAUGU____UACUUGUGGCUCUUGUCUCGGAAUUGAACUAAAUGCAAGUAUGAUAC .......................((((((((.((((...((((((((..((.....)).((.(((....))).))))))))))...)))).))))))))... (-13.79 = -14.90 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:04 2006