Locus 3382

Sequence ID X_DroMel_CAF1
Location 9,008,475 – 9,008,595
Length 120
Max. P 0.919454
window5539

overview

Window 9

Location 9,008,475 – 9,008,595
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -31.37
Consensus MFE -30.03
Energy contribution -30.81
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.16
Structure conservation index 0.96
SVM decision value 1.13
SVM RNA-class probability 0.919454
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9008475 120 - 22224390
UAGCACGUUCUGGGACAUUAAAAACAACCAGAAGACCGCCAAUUUGAUUGGAGUCGAUAAUUAUUGGAUUAAACAAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG
..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((..........)))))))).....).))))).))))))...)))...)).)))).. ( -27.94)
>DroEre_CAF1 2857 119 - 1
AAGCACGU-CUGGGGCACAAAAAACAACCAGAAGACCGCCAACUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG
..((((.(-((((..............))))).....((....(((((.(((((.(.((((((((((......)))))))))).....).))))).)))))((....))..)).)))).. ( -32.24)
>DroYak_CAF1 3408 120 - 1
UAGCACGUUCUGGGGCACAAAAAACAACCAGAAGACCGCCAAUUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG
..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((((......)))))))))).....).))))).))))))...)))...)).)))).. ( -33.94)
>consensus
UAGCACGUUCUGGGGCACAAAAAACAACCAGAAGACCGCCAAUUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG
..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((((......)))))))))).....).))))).))))))...)))...)).)))).. (-30.03 = -30.81 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006