Locus 3379

Sequence ID X_DroMel_CAF1
Location 8,998,873 – 8,998,989
Length 116
Max. P 0.650024
window5532

overview

Window 2

Location 8,998,873 – 8,998,989
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 86.58
Mean single sequence MFE -35.50
Consensus MFE -22.05
Energy contribution -22.67
Covariance contribution 0.63
Combinations/Pair 1.28
Mean z-score -2.26
Structure conservation index 0.62
SVM decision value 0.24
SVM RNA-class probability 0.650024
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8998873 116 - 22224390
CGUGCUCCUUCUUCUCCAAAUCCGGGUCCACCUCUUCGUUUUGGAAGGAGGGAAUACCACCGGGCGGCCGUUGUCGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA
.(((.((((((((.((((((...(((....)))......)))))))))))))).))).....(((((..(((((.((......))..)))))..)))))................. ( -36.10)
>DroSec_CAF1 10652 116 - 1
CGUGCUCCUUCUCCUUAAAAUCCGGAUCCACCUCUUCGAUUUGGAAGGAGGGAAUACCACCGGGCGGCCGUUGUUGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA
.(((.(((..(((((.....((((((((.........)))))))))))))))).))).....(((((..(((((.((......))..)))))..)))))................. ( -34.40)
>DroEre_CAF1 10774 113 - 1
CGUGCUUCUUGCCCUCCGAAUCCGGGUCCACCUCUUCGAUUUGGAAG---GGCAUUCACCCGGGCGGCCGACAUCGCCUGUCCGCCUGCAACAUCCGCCACCAACAACUCCAACAA
..(((....(((((((((((((.(((....)))....))))))).))---))))......(((((((.((....)).)))))))...))).......................... ( -36.20)
>DroYak_CAF1 12377 113 - 1
CAUGGAUCUUGCCCUCCAAAUCCGGGUCCACCUCUUCGAUUUGGAAG---GGAAUUCCCCCGGGCAGCUGUCGUCGUCUGUCCGUCUGCAACAUCCGCCACCAACCACUCCAACAA
...((((.((((..((((((((.(((....)))....)))))))).(---((....))).(((((((.((....)).)))))))...)))).)))).................... ( -35.30)
>consensus
CGUGCUCCUUCCCCUCCAAAUCCGGGUCCACCUCUUCGAUUUGGAAG___GGAAUACCACCGGGCGGCCGUCGUCGCCUGUCCGCCUGCAACAUCCGCCACCAACCACUCCAACAA
..(((.((((((..((((((((.(((......)))..)))))))).))))))........(((((((.((....)).)))))))...))).......................... (-22.05 = -22.67 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006