Locus 3378

Sequence ID X_DroMel_CAF1
Location 8,997,685 – 8,997,792
Length 107
Max. P 0.957330
window5531

overview

Window 1

Location 8,997,685 – 8,997,792
Length 107
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -31.45
Consensus MFE -19.53
Energy contribution -21.84
Covariance contribution 2.31
Combinations/Pair 1.10
Mean z-score -3.73
Structure conservation index 0.62
SVM decision value 1.48
SVM RNA-class probability 0.957330
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8997685 107 - 22224390
UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACGAAUU---GUAUUUUCUGCGAAAGCGAGACGGGAAUAGUGUGUACGAGCGGGC----------GGGA
............(((((((((....))))))))).......(((..............---.((((..((((....)))....)..))))((.(((....))).))----------))). ( -27.40)
>DroSec_CAF1 9462 120 - 1
UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACGAAUUGUUGUAUUUUCUGCGAAAGCGAGACGGGAGUAGUGUCUUCGAGAGGGGUGGUGGGGUGGAGA
............(((((((((....))))))))).......((((.((((.((((....))))..(((((.((((..((..((....))..))..))))))))))))).))))....... ( -37.60)
>DroEre_CAF1 9609 112 - 1
UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUUUAUUUUCUGCGAAAGCGGGACGGAAAUAGUGUGUGUGAGAGGAA------GG--GGGA
............(((((((((....))))))))).......(((....((.(((.((((((((...((((((....))))))..))))))))...)))....))..------..--))). ( -34.60)
>DroYak_CAF1 11248 112 - 1
UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUUUAUUUUCUGCGAAAACGGAAUGGAAGUAGUGGGUGCGAAAGGGA------GG--UGGA
............(((((((((....)))))))))............((((.((..((((((((...(((((......)))))..))))))))..)).(....)...------))--)).. ( -26.20)
>consensus
UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUGUAUUUUCUGCGAAAGCGAGACGGAAAUAGUGUGUGCGAGAGGGA______GG__GGGA
............(((((((((....))))))))).......(((.......(((.((((((((...((((((....))))))..)))))))).)))......)))............... (-19.53 = -21.84 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:54 2006