Locus 3375

Sequence ID X_DroMel_CAF1
Location 8,996,014 – 8,996,134
Length 120
Max. P 0.640022
window5527

overview

Window 7

Location 8,996,014 – 8,996,134
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.31
Mean single sequence MFE -59.92
Consensus MFE -51.44
Energy contribution -52.00
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.22
SVM RNA-class probability 0.640022
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8996014 120 - 22224390
AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGCACCGGUGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUGGGUGGCUCGACUAGCGU
.(((((.((.((((((.(((....))).))))))((((.(((((((.(((....))).)))))))))))))))(((((((((.(...(((((...)))))..))))))))))...))).. ( -62.80)
>DroSec_CAF1 7789 120 - 1
AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGCACCGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUUGGUGGCUCGACUAGCGU
.(((((.((.((((((.(((....))).))))))((((.(((((((.((......)).)))))))))))))))((((((((((....(((((...)))))..))))))))))...))).. ( -61.40)
>DroEre_CAF1 7937 120 - 1
AGCUGCUCCGGCUGCUGGAGCUACCUCAGGUGGCGGUGUGGGUGUCGGAACUGGUGUGGGCACCUUCCCGGGCUGGACCACCACUUUGGGUGGUUCCGUUUUAGGUGGCUCGACUAGCGU
.((((.((.(((..((((((((((((.((((((.(((.(.(((.(.((((..((((....)))))))).).))).)))).)))))).))))))))))......))..))).)).)))).. ( -58.40)
>DroYak_CAF1 9543 120 - 1
AGCUGCUCCGGCCGCUGGAGCUACCUCAGGUGGCGGUGUGGGUGUCGGAACUGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGGGGGUUCCGUUUUAGGUGGCUCGACUAGCGU
.((((.((.((((((((((((..(((.(((((((((((.(((((((...((....)).))))))))))))(((...))).)))))).)))..)))))......))))))).)).)))).. ( -57.10)
>consensus
AGCUGCUCCGGCCGCUGGAGCCACCUCAGGCGGCGGUGUGGGUGUCGGAACCGGAGUGGGCACCUUGCCGGGCUGGGCCACCACUUUGGCGGGUUCCGUUUUAGGUGGCUCGACUAGCGU
.(((((.((.((((((.(((....))).))))))((((.(((((((.((......)).)))))))))))))))(((((((((....(((......))).....)))))))))...))).. (-51.44 = -52.00 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:50 2006