| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,987,863 – 8,987,953 |
| Length | 90 |
| Max. P | 0.879599 |
| Location | 8,987,863 – 8,987,953 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.85 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.39 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8987863 90 + 22224390 UAAGCACGCGGGCAUAAGCCGCCCCCUUUUGUCGAUAAGUGAACGCGA------AUGCGAAACAUUCGUGUGCGCAAAAAAGUGAACAAGAAAAUU ....(((..((((.......))))..............(((.((((((------(((.....))))))))).)))......)))............ ( -24.80) >DroSim_CAF1 1515 87 + 1 UAAACACGCGGGCGCAAGCCGCCCCCUUUUUUCGAUAAGUGAACGUGA------AUGCGAAACACUCGCGGGCGCAAAAAAGUGAACAAGAAA--- ....(((...(((....)))((((......((((....(....).)))------).((((.....))))))))........))).........--- ( -25.50) >DroYak_CAF1 1350 92 + 1 UAAUCACGCGGGCGCAAGCCGCCCCCUUU--UCGAUAAGUGAACGCGAAGGGUAAUGCGAAAGCA--AAGAGUGCAAAAAAGUGAACAAGAAAAUC ...((((...(((....)))((.((((((--.((.........)).))))))...(((....)))--......))......))))........... ( -27.70) >consensus UAAACACGCGGGCGCAAGCCGCCCCCUUUU_UCGAUAAGUGAACGCGA______AUGCGAAACAAUCGAGAGCGCAAAAAAGUGAACAAGAAAAU_ ....(((((((((....))).....(((........)))....))).........((((.............)))).....)))............ (-15.83 = -15.39 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:40 2006