Locus 3360

Sequence ID X_DroMel_CAF1
Location 8,977,453 – 8,977,573
Length 120
Max. P 0.687045
window5499

overview

Window 9

Location 8,977,453 – 8,977,573
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -23.71
Consensus MFE -21.74
Energy contribution -21.63
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.92
SVM decision value 0.32
SVM RNA-class probability 0.687045
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8977453 120 + 22224390
AGAGUAUUUAAUCCAAAGUCACUGCACAACACUUGGCCAUAAGUUAUUCCCAUUUGGAUUCCCCUUCUCAAUUGUUUCAGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU
.(((...........((((((((((..((((.((((....(((....(((.....))).....))).)))).))))...((....))))))))))))))).................... ( -18.80)
>DroSec_CAF1 6070 111 + 1
---------AAUCCGAAGUCACUGCAUAACACUUGGCCACAAGUUAUCCCCAUUUGGAUUCACCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU
---------.....(((((((((((.....(((((....))))).((((......))))............................)))))))))))...................... ( -23.80)
>DroSim_CAF1 716 120 + 1
GGAGUAUUUAAUCCGAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCACCUUCCCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU
(((........)))(((((((((((..((((.((((.........((((......))))........)))).))))...((....)))))))))))))...................... ( -28.53)
>consensus
_GAGUAUUUAAUCCGAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCACCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU
..............(((((((((((..((((.((((.........((((......))))........)))).))))...((....)))))))))))))...................... (-21.74 = -21.63 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:23 2006