| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,965,197 – 8,965,288 |
| Length | 91 |
| Max. P | 0.772218 |
| Location | 8,965,197 – 8,965,288 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 91.37 |
| Mean single sequence MFE | -12.77 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.98 |
| Structure conservation index | 1.06 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8965197 91 - 22224390 AAAUUCAAAACUUUGCCUUCCGCUGGUAAUUUACCUUUUCUCUUAAUUGGCAUCAGAUUCGCC-----GCCCUUUUGGCCCCAAUUGUUUUUUUUU ......(((((.(((((.......)))))...............((((((..(((((......-----.....)))))..)))))))))))..... ( -12.60) >DroSec_CAF1 10910 86 - 1 AAAUUCAAAACUUUGCCUUCCGCUGGUAAUUUACCUUUCCUCUUAAUUGGCAUCAGAUUCGCC-----GCCCUUUUGGCCCCAAUUGUUU-----U ......(((((.(((((.......)))))...............((((((..(((((......-----.....)))))..))))))))))-----) ( -12.50) >DroYak_CAF1 11432 91 - 1 AAAUUCAAAACUUCGCCUUCCGCUGGUAAUUUACCUUUUCUCUUAAUUGGCAUCAGAUUCGCCGUUUCGCCCUUUUGGCCCCAAUUGUUU-----U ......(((((...(((.......))).................((((((..(((((...((......))...)))))..))))))))))-----) ( -13.20) >consensus AAAUUCAAAACUUUGCCUUCCGCUGGUAAUUUACCUUUUCUCUUAAUUGGCAUCAGAUUCGCC_____GCCCUUUUGGCCCCAAUUGUUU_____U ............(((((.......)))))..............(((((((..(((((...((......))...)))))..)))))))......... (-13.53 = -13.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:18 2006