Locus 3355

Sequence ID X_DroMel_CAF1
Location 8,965,076 – 8,965,166
Length 90
Max. P 0.670876
window5493

overview

Window 3

Location 8,965,076 – 8,965,166
Length 90
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 77.46
Mean single sequence MFE -15.73
Consensus MFE -13.86
Energy contribution -13.53
Covariance contribution -0.33
Combinations/Pair 1.15
Mean z-score -0.65
Structure conservation index 0.88
SVM decision value 0.29
SVM RNA-class probability 0.670876
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8965076 90 + 22224390
GCCUUGGCGCCCACUUCGAACCCCCCUUGAUUCCCCACCC----UCCCCCGGGUAACUACAAUUGCCCUUCUACUCGGCGAACUGCCUUGAACA--
..(..(((............................((((----......))))........(((((.........)))))...)))..)....-- ( -15.40)
>DroSec_CAF1 10776 96 + 1
GCCUUGGCGCCCACUUAAAACCCCCCUUGUUUCCACCCCCCACACCCCCCGGGGAACUACAAUUGCCCGUCUACCCGGCGAACUGCCUUGAACAGC
..(..(((..................((((.....((((...........))))....))))(((((.(.....).)))))...)))..)...... ( -17.30)
>DroYak_CAF1 11299 78 + 1
GCCUUGGCGCCCACUUC--------------UCCGCCCCCC--CUCCCCUUGGGAACUACAAUUGCCCUUCUACCCGGCAAACUGCCUUGAACA--
..(..(((.........--------------........((--(.......)))........(((((.........)))))...)))..)....-- ( -14.50)
>consensus
GCCUUGGCGCCCACUUC_AACCCCCCUUG_UUCCACCCCCC___UCCCCCGGGGAACUACAAUUGCCCUUCUACCCGGCGAACUGCCUUGAACA__
..(..(((............................((((..........))))........(((((.........)))))...)))..)...... (-13.86 = -13.53 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006