Locus 3353

Sequence ID X_DroMel_CAF1
Location 8,958,383 – 8,958,496
Length 113
Max. P 0.992217
window5490

overview

Window 0

Location 8,958,383 – 8,958,496
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.21
Mean single sequence MFE -24.53
Consensus MFE -14.74
Energy contribution -16.26
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -2.37
Structure conservation index 0.60
SVM decision value 2.31
SVM RNA-class probability 0.992217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8958383 113 - 22224390
UGAUU------AUGCAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUAGAAAAAGCAGGAUAUUAUAUACGAUCAGAUGCAGCUGAUCAAAGCAAGGCAUAUAUAC-
.....------....((((((((.(((..((.......((.((((((((....)))))))).))...))..............((((((......))))))...)))))))))))....- ( -28.20)
>DroSec_CAF1 4194 88 - 1
UGAUU------AUGUAUAUGUCUGUGCAAGCGAAAUGAUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUAUUUA-------------------------GGGCAUAUAUAC-
.....------.(((((((((((............((.(((((((((((....)))))))))))....))............-------------------------))))))))))).- ( -21.95)
>DroSim_CAF1 4621 88 - 1
UGAUU------AUGUAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUACUUA-------------------------AGGCAUAUAUAC-
.....------.(((((((((((......((.......(((((((((((....)))))))))))...))(((......))).-------------------------))))))))))).- ( -22.50)
>DroEre_CAF1 4473 118 - 1
UGAUUACAUGUAUGUAUAUGUCCGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAUAGCAGGGUAUUAUAUACAAUCUGAUGCAGCUGAUCAAGGCAAGGGAUAUAUC--
((((((..((((((((((((.((.(((.(((......)))(((((((((....))))))))).....))).))...))))))))......))))..))))))................-- ( -29.60)
>DroYak_CAF1 4012 90 - 1
UGAUU------AUGUAUAUGUCCGUGCAAGCGAAAU----GUAUGGAUCACAGGAUUUAGACAAAUAGCAGGAUAUUAUA--------------------CAAAUCAGGGGAUAUAUAUC
(((((------.(((((((((((.(((........(----((.((((((....)))))).)))....)))))))).))))--------------------)))))))............. ( -20.40)
>consensus
UGAUU______AUGUAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUAUAUA__________________CAA__CAAGGCAUAUAUAC_
............(((((((((((((....)).......(((((((((((....)))))))))))...........................................))))))))))).. (-14.74 = -16.26 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006