| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,957,583 – 8,957,685 |
| Length | 102 |
| Max. P | 0.740889 |
| Location | 8,957,583 – 8,957,685 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -13.10 |
| Energy contribution | -15.18 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8957583 102 + 22224390 UGGCGCUCGAUAAAAUGAAAGAAAGAAAAAAAAGGCAAACGCCCCCAAAAAGCGGGUUCCAAACCAAAGCAAUUUUUGUGUACAAUUAUCGCGCCCAUUUGC (((.((.((((((....................(((....)))..((((((((.(((.....)))...))..)))))).......)))))).)))))..... ( -22.50) >DroSec_CAF1 3421 98 + 1 UGGCGCUCGAGAAAUUGAAAGAAAA----AAAAGGCAAACGCCCCCAAAAAGCGGGUUCCAAACCAAAGCAAUUUUUGUGUACGAUUAUCGCGCCCAUUUGC .(((((((((....))))..((...----....(((....)))..((((((((.(((.....)))...))..))))))..........)))))))....... ( -23.50) >DroSim_CAF1 3854 102 + 1 UGGCGCUCUAGAAAUUGAAAGAAAAAAAAAAAAGGCAAACGCCCCCAAAAAGCGGGUUCCAAACCAAAGCAAUUUUUGUGUACAAUUAUCGCGCCCAUUUGC .(((((....(((((((................(((....)))..((((((((.(((.....)))...))..))))))....))))).)))))))....... ( -21.20) >DroEre_CAF1 3631 91 + 1 UGGCGCUCGGGAAAUUAA-----------AAAAGGCAAACGCCCCCAAAAUGCGGGUUCCAAGCCAAAGCAAUUUUUGUGUACAAUUAUCGCGCCCAUUUGC .((((((.((((......-----------....(((....)))(((.......))))))).)))....((.((..(((....)))..)).)))))....... ( -22.90) >DroYak_CAF1 3201 90 + 1 UGGCGCUCGAGAAAUUGA-----------A-AAGGCAAACGCCCCCAAAAAGCGGGUUGCAAACCAAAGCAAUUUUUGUGUACAAUUAUCGCGCCCAUUUGC .(((((((((....))))-----------.-..(((....)))..((((((((.(((.....)))...))..))))))............)))))....... ( -22.80) >DroAna_CAF1 3494 79 + 1 AAGCGCUAAGAACACA--------AACCAAAACAACUAACGCCUCCAGACGGCUUGU--------------AGUUUUUUAUACGAGUAACGCGCCCAUAUC- ..((((..........--------...............((.(....).))((((((--------------(........)))))))...)))).......- ( -13.90) >consensus UGGCGCUCGAGAAAUUGA______A____AAAAGGCAAACGCCCCCAAAAAGCGGGUUCCAAACCAAAGCAAUUUUUGUGUACAAUUAUCGCGCCCAUUUGC .(((((...........................(((....)))..((((((((.(((.....)))...))..))))))............)))))....... (-13.10 = -15.18 + 2.08)
| Location | 8,957,583 – 8,957,685 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -16.47 |
| Energy contribution | -16.55 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8957583 102 - 22224390 GCAAAUGGGCGCGAUAAUUGUACACAAAAAUUGCUUUGGUUUGGAACCCGCUUUUUGGGGGCGUUUGCCUUUUUUUUCUUUCUUUCAUUUUAUCGAGCGCCA .(((((.((.(((((..(((....)))..))))).)).)))))...((((.....))))((((((((..........................)))))))). ( -24.27) >DroSec_CAF1 3421 98 - 1 GCAAAUGGGCGCGAUAAUCGUACACAAAAAUUGCUUUGGUUUGGAACCCGCUUUUUGGGGGCGUUUGCCUUUU----UUUUCUUUCAAUUUCUCGAGCGCCA .......((((((.....)))...........((((.((.((((((((((.....))))(((....)))....----.....))))))...)).))))))). ( -24.60) >DroSim_CAF1 3854 102 - 1 GCAAAUGGGCGCGAUAAUUGUACACAAAAAUUGCUUUGGUUUGGAACCCGCUUUUUGGGGGCGUUUGCCUUUUUUUUUUUUCUUUCAAUUUCUAGAGCGCCA .......(((.......(((....))).....(((((((.((((((((((.....))))(((....))).............))))))...)))))))))). ( -25.90) >DroEre_CAF1 3631 91 - 1 GCAAAUGGGCGCGAUAAUUGUACACAAAAAUUGCUUUGGCUUGGAACCCGCAUUUUGGGGGCGUUUGCCUUUU-----------UUAAUUUCCCGAGCGCCA .......((((((((..(((....)))..)))))....((((((..((((.....))))(((....)))....-----------........))))))))). ( -28.80) >DroYak_CAF1 3201 90 - 1 GCAAAUGGGCGCGAUAAUUGUACACAAAAAUUGCUUUGGUUUGCAACCCGCUUUUUGGGGGCGUUUGCCUU-U-----------UCAAUUUCUCGAGCGCCA ((((((.((.(((((..(((....)))..))))).)).))))))..((((.....))))((((((((....-.-----------.........)))))))). ( -28.54) >DroAna_CAF1 3494 79 - 1 -GAUAUGGGCGCGUUACUCGUAUAAAAAACU--------------ACAAGCCGUCUGGAGGCGUUAGUUGUUUUGGUU--------UGUGUUCUUAGCGCUU -.....((((((...((.((..(((((((((--------------(...(((.......)))..))))).)))))...--------)).)).....)))))) ( -19.70) >consensus GCAAAUGGGCGCGAUAAUUGUACACAAAAAUUGCUUUGGUUUGGAACCCGCUUUUUGGGGGCGUUUGCCUUUU____U______UCAAUUUCUCGAGCGCCA .......(((((..................................((((.....))))(((....)))...........................))))). (-16.47 = -16.55 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:13 2006