| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,956,383 – 8,956,487 |
| Length | 104 |
| Max. P | 0.995803 |
| Location | 8,956,383 – 8,956,487 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.96 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -14.34 |
| Energy contribution | -17.57 |
| Covariance contribution | 3.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.49 |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.995803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8956383 104 + 22224390 CACCACUUGGUAGAUUGCUCCAAUAAGAAGAUGAUCGUGUGCUUGUGAUCACCCAAAAGGUGGCUACAAGUACGCUGCACUCCUUAUUCAUUCAGAUAUAUAGU------------ .(((....))).((.((....((((((.((.((...(((((((((((..((((.....))))..)))))))))))..)))).)))))))).))...........------------ ( -31.60) >DroSim_CAF1 2304 97 + 1 CCCCACUUGGUAGAUUGCUCCAAUAAGAAGAGCAUCGUGUGCUUGUGAUCACCCAAAAGGUGGCUACAAGUAUGCUGCACUUCUAAUUCAU--AGAUAG----------------- ......((((.((....))))))..(((((.(((..(((((((((((..((((.....))))..)))))))))))))).))))).......--......----------------- ( -31.90) >DroEre_CAF1 2380 103 + 1 UCCCACUUGGUAGAUUAUGCCAAUCAGAAU-------------GAGGAUCACCCGAAAGGUGGCUAGAAGUAUGCUGCACUUUGUAUGCAUAGAAAUAUUUGAUUUCUGAUUUCAA ......((((((.....))))))((((((.-------------..((.((((.(....)))))))....((((((........))))))...............))))))...... ( -24.10) >consensus CCCCACUUGGUAGAUUGCUCCAAUAAGAAGA__AUCGUGUGCUUGUGAUCACCCAAAAGGUGGCUACAAGUAUGCUGCACUUCUUAUUCAU__AGAUAU_U__U____________ ......((((.........)))).............(((((((((((..((((.....))))..)))))))))))......................................... (-14.34 = -17.57 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:11 2006