Locus 3350

Sequence ID X_DroMel_CAF1
Location 8,955,574 – 8,955,665
Length 91
Max. P 0.980003
window5486

overview

Window 6

Location 8,955,574 – 8,955,665
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 90.34
Mean single sequence MFE -15.12
Consensus MFE -14.46
Energy contribution -14.86
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.96
SVM decision value 1.85
SVM RNA-class probability 0.980003
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8955574 91 - 22224390
CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUUGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACACGCACACACAUUAA
..............(((((((((..(......)..))))))))).((((..((((((....)))))))))).................... ( -15.40)
>DroSec_CAF1 1472 85 - 1
CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACA------CUCACAUUAA
..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).)))))..------.......... ( -16.60)
>DroSim_CAF1 1494 89 - 1
CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA--CACACACAUUAA
..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).)))))....--............ ( -16.60)
>DroEre_CAF1 1601 85 - 1
CAACAACAAAUUACUGUGCUUUACUCACUUCAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA------UACACAUG
..............(((((((((((......)))..)))))))).((((..((((((....))))))))))......------........ ( -13.50)
>DroYak_CAF1 1320 85 - 1
CAACAACAAAUUACUGUGCUUUAUUCACUUCAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA------GACACACA
..............((((((((...(......)...)))))))).((((..((((((....))))))))))......------........ ( -13.50)
>consensus
CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA____C_CACAUUAA
..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).))))).................. (-14.46 = -14.86 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:10 2006