Locus 3346

Sequence ID X_DroMel_CAF1
Location 8,949,322 – 8,949,414
Length 92
Max. P 0.810471
window5478

overview

Window 8

Location 8,949,322 – 8,949,414
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 85.33
Mean single sequence MFE -29.20
Consensus MFE -23.30
Energy contribution -22.80
Covariance contribution -0.50
Combinations/Pair 1.37
Mean z-score -1.81
Structure conservation index 0.80
SVM decision value 0.65
SVM RNA-class probability 0.810471
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8949322 92 - 22224390
GAUGGUUUGAUUGCUCUUCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGGAGCAAGGAUACUGGCUUCCGGAUCUAGAAUAUAAU
(((((((((..(((.((((.(.((((......)))).).)))))))))))))..((((((.((....)).))))))..)))........... ( -28.10)
>DroSec_CAF1 13746 92 - 1
GAUGGUUUGAUUGCUCUCCACGUGCGAAUCCAUGCGGGAGCAGGUAUAAGCCGAGGGAGCGACGGUACUUGCUUCCAGAUCUAGAAUAUAAU
(((((((((.((((((.((.((((......)))).))))))))...))))))..((((((((......))))))))..)))........... ( -32.70)
>DroSim_CAF1 13192 91 - 1
GAUGGUUUGAUUGCUCUCCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGAAGC-AGGGUACUUGCUUUCAGAUCUAGAAUAUAAU
((((((((((((..(((((.(((..(....)..)))))))).))).))))))..((((((-(((...)))))))))..)))........... ( -27.10)
>DroYak_CAF1 12937 92 - 1
GAUGGUUGGAUUGCCUUGUACGUGCGCAUCUAUGCGGGUAAUGGUACAAGCCGGGGGAGUAAGAGUAUUUGCUUCCCGAUCUAUAAUAAAAU
(((((((....((((...(((.((((......)))).)))..))))..)))).((((((((((....)))))))))).)))........... ( -28.90)
>consensus
GAUGGUUUGAUUGCUCUCCACGUGCGCAUCCAUGCGGGAGAAGGUAUAAGCCGAGGGAGCAAGGGUACUUGCUUCCAGAUCUAGAAUAUAAU
(((((((((..((((((((.(((..(....)..)))))))..))))))))))..(((((((((....)))))))))..)))........... (-23.30 = -22.80 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:03 2006