Locus 3344

Sequence ID X_DroMel_CAF1
Location 8,946,605 – 8,946,700
Length 95
Max. P 0.561578
window5476

overview

Window 6

Location 8,946,605 – 8,946,700
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 70.93
Mean single sequence MFE -17.33
Consensus MFE -12.06
Energy contribution -11.23
Covariance contribution -0.83
Combinations/Pair 1.53
Mean z-score -0.81
Structure conservation index 0.70
SVM decision value 0.06
SVM RNA-class probability 0.561578
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8946605 95 - 22224390
-------UGCAAUUUCUUCCUUAUCUUUUUGCAUUGAUUUUAAUUGAACUUUUUAUUAUAUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA
-------(((((................))))).....((((((.((.((..((.(((((.(((.(((....)))))))))))...))..)).)).)))))) ( -13.99)
>DroSec_CAF1 10725 100 - 1
UUUUAUAUGCAAUUUCUUCCUUAUCUUU--GAUUGGAUUUUAAUUGAACUUUUUAUUAUUUGCUUAGGGUUUUCUGGCUGUGGGCGAAUUGGAUCCAUUGAA
.........((((....(((.....((.--.((((.....))))..)).........(((((((((.((((....)))).))))))))).)))...)))).. ( -17.80)
>DroSim_CAF1 10378 83 - 1
-----------------UACUUAUCUUU--GAUUGUAUUUUAAUUAAACUUUUUAUUAUUUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA
-----------------.....((((((--(((((.....)))))))..........(((((((((.((((....)))).))))))))).))))........ ( -15.00)
>DroEre_CAF1 10827 100 - 1
UUUUAUAUGAAAUUUCUUCCGUAUCUUA--AGAUUGGUUUUAAUCGAACUUUUUACUAUUUGACCAGGGCUUCCUGGCUGUGGGCGAGUUGGAUCCAUUGAA
.................((((((....(--((.(((((....))))).)))..))).(((((.(((.((((....)))).))).))))).)))......... ( -20.00)
>DroWil_CAF1 12901 81 - 1
------------------GGGCAUCUUU--U-UUACAUUUUCACGUUUUUUUUUUUAAUUUAUCUAGGGCUUCUUGGCCGUUGGUGAAUUGGAUCCCCUGAA
------------------(((.(((...--.-..((........)).........(((((((((.(.((((....)))).).)))))))))))).))).... ( -18.20)
>DroYak_CAF1 10200 99 - 1
UUUUAUAUGAAGUUUCUUCCUUAUCUAA--AGAUUGGU-UUAAUCGAACUUUUCAUUAUUUGAUUAGGGUUUUCUGGCCGUGGGCGAGUUGGAUCCCUUGAA
........((((...)))).(((..(((--.((..(((-((....)))))..)).)))..)))((((((...((..((((....)).))..))..)))))). ( -19.00)
>consensus
_______UG_AAUUUCUUCCUUAUCUUU__GAAUUGAUUUUAAUUGAACUUUUUAUUAUUUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA
....................................................((...(((((((((.((((....)))).)))))))))..))......... (-12.06 = -11.23 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:01 2006