| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,931,210 – 8,931,312 |
| Length | 102 |
| Max. P | 0.663941 |
| Location | 8,931,210 – 8,931,312 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.16 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8931210 102 + 22224390 GAAUAUAAAAAAUAAAUCAAAGCCAAAGCGCAAGCCCACUCCCAUGGAAGUAGAGGAGGCUGAGCUAGACGAGGUGCGCUCGGAUGAGCCGCAGCCAGGGGA ......................((...((....))((..(((..((....))..)))(((((.(((...((((.....))))....)))..))))).)))). ( -27.20) >DroSec_CAF1 2936 102 + 1 GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGUCGCAGUCAGAGGA ................((...(((....(((....(((((((....)))))))((....))..)))......)))((((((....))).))).....))... ( -26.80) >DroSim_CAF1 2938 102 + 1 GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGCCGCAGCCAGAGGA ......................((....(((....(((((((....)))))))((....))..)))...((..(((.((((....)))))))..))...)). ( -30.70) >consensus GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGCCGCAGCCAGAGGA ......................((........((((((((((....)))))))((....))..)))......(((((((((....))).))).)))...)). (-22.99 = -23.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006