Locus 3338

Sequence ID X_DroMel_CAF1
Location 8,927,732 – 8,927,829
Length 97
Max. P 0.825125
window5468

overview

Window 8

Location 8,927,732 – 8,927,829
Length 97
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 67.46
Mean single sequence MFE -24.40
Consensus MFE -6.16
Energy contribution -7.18
Covariance contribution 1.02
Combinations/Pair 1.31
Mean z-score -2.17
Structure conservation index 0.25
SVM decision value 0.69
SVM RNA-class probability 0.825125
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8927732 97 - 22224390
UCGAUCUUAAUAACUGCCUG--UUAGGAAA-----AAAUCUCAAAUUCUGGCUAUAAAGGCGCUAGGUGGGCAGCACAAUUGGCGUCUUUUGAUUUCCACACAA
....((((((((......))--))))))..-----.............(((....((((((((((.(((.....)))...))))))))))......)))..... ( -22.00)
>DroSec_CAF1 41662 82 - 1
AGGAUCUUAAUAACUGCCUGUGUUAAGAAA-----AAAUCUCAAAUUCUGGCUAAAAA-----UUGGUGGGCAAUACCA------------AAUUUAGACGGAA
....((((((((.(.....)))))))))..-----..........(((((.(((((..-----((((((.....)))))------------).))))).))))) ( -17.70)
>DroSim_CAF1 38391 80 - 1
AGGAUCUUAAU---UGCCUGUGUUAAGAAAA----AAAUCUCAAAUUCUGGCUAAAAA-----UUGGUGGGCAAUACCA------------AAUUUUGACGGAA
....(((((((---.......)))))))...----..........(((((..(((((.-----((((((.....)))))------------).))))).))))) ( -16.50)
>DroEre_CAF1 41902 102 - 1
AGGAACUUGAUAGUUGCCUGUGUUAAAAAU--AAAAGAGCUAAAAUCCUGGCUACAAAGACGCCGGGUGGGCAGCACAAUUGGCGUCUUUUGAUUUCCAUGAUA
.((((.(..(.((.((((((((((......--......(((.....((((((.........))))))..)))))))))...)))).)).)..).))))...... ( -28.90)
>DroYak_CAF1 42669 104 - 1
AGGAACUUAAUAACUGCCUGGGUUAAAAAAAAAAAAGGGCUAGAAUUCUGGCCGCAAAGGCGCCAGUUGGACAGCACAAUUGGCGUCUCUUGAAUUCCGCGGAA
.............((((..(((((.............((((((....)))))).(((((((((((((((.......)))))))))))).)))))))).)))).. ( -36.90)
>consensus
AGGAUCUUAAUAACUGCCUGUGUUAAGAAA_____AAAUCUCAAAUUCUGGCUAAAAAG_CGCUAGGUGGGCAGCACAAUUGGCGUCU_UUGAUUUCCACGGAA
...............(((...............................)))......(((((((.(((.....)))...)))))))................. ( -6.16 =  -7.18 +   1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:53 2006