| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,910,221 – 8,910,313 |
| Length | 92 |
| Max. P | 0.518817 |
| Location | 8,910,221 – 8,910,313 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 68.54 |
| Mean single sequence MFE | -19.41 |
| Consensus MFE | -6.21 |
| Energy contribution | -6.68 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.32 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8910221 92 + 22224390 AUCUAUUG-------GCUAACUA-----------UUGC-------AUACAAAGUGGAAACUAUUUGUUUGAAUGCAUAAUGAUUGCAACAC-GAUUCAAU-CAAAUGAAUCACGAUGGA .(((((((-------((......-----------.(((-------(((((((..(....)..)))))....)))))........)).....-((((((..-....)))))).))))))) ( -22.66) >DroSec_CAF1 24349 92 + 1 AUCUAUUG-------CCUAACUG-----------UUGC-------AUACAAAGUGGAAACUAUUUGUUUGAAUGCAUAAUGAUUGCAACAC-GAUUCAAU-CAAAUGAAUCACGAUAGA .(((((((-------......((-----------((((-------(..((.(((....)))...(((......)))...))..))))))).-((((((..-....)))))).))))))) ( -22.90) >DroSim_CAF1 20322 92 + 1 AUCUAUUG-------GCUAACUG-----------UUGC-------AUACAAAGUGGAAACUAUUUGUUUGAAUGCAUAAUGAUUGCAACAC-GAUUCAAU-CAAAUGAAUCACGAUAGA .(((((((-------......((-----------((((-------(..((.(((....)))...(((......)))...))..))))))).-((((((..-....)))))).))))))) ( -23.80) >DroEre_CAF1 24785 110 + 1 AGCUAUUAAUGCUUGCUUAUAUAUAUAUAUUACAAUGC-------UUGCAAAGUGAAAACUAUUUGUUUGAAUGCAUAAUGAUUGCAACAC-GAUUAAGG-CGAAUGAAUCAGGAGAGA .(((.(((((((..((..((((....))))......))-------..))...(((.((((.....))))...((((.......)))).)))-.)))))))-)................. ( -15.60) >DroWil_CAF1 32217 97 + 1 GUCU---C-------GCCGACUU-----------CGAUAUACCAAGUACCAAGUGAAA-CAUCUAUUUUGAAUACGAAAUGAAUGUAUCGUAGAUUCUUUUGAAAUGAUGCAUAAUAAA ((.(---(-------((..((((-----------.(......))))).....)))).)-)...(((((((....))))))).(((((((((...(((....))))))))))))...... ( -16.30) >DroYak_CAF1 25535 77 + 1 ---UU-----------------------------UUGC-------AUACAAAGUGG-AACUAUUUGUUUGAAUGCAUAAUCAUUGCAACAC-GAUUCAAU-CAAAUGAAUCACGAGAGA ---((-----------------------------(((.-------.......((((-(((.....))))...((((.......)))).)))-((((((..-....)))))).))))).. ( -15.20) >consensus AUCUAUUG_______GCUAACUA___________UUGC_______AUACAAAGUGGAAACUAUUUGUUUGAAUGCAUAAUGAUUGCAACAC_GAUUCAAU_CAAAUGAAUCACGAUAGA ....................................................(((.((((.....))))...((((.......)))).))).((((((.......))))))........ ( -6.21 = -6.68 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:47 2006