| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,889,218 – 8,889,312 |
| Length | 94 |
| Max. P | 0.978055 |
| Location | 8,889,218 – 8,889,312 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -22.64 |
| Consensus MFE | -16.50 |
| Energy contribution | -19.50 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8889218 94 + 22224390 UGACGAAAAACAAAGCAUAAGCCCAAAAUGACCGAAUGUCGAAUAAAAAUAAAUGCAGCCGCUUCUUCGGCUGCUUCUUCUGGGUCUUCUGCUU ............(((((.(((((((...((((.....)))).............(((((((......)))))))......)))).))).))))) ( -28.50) >DroSec_CAF1 4010 94 + 1 UGACGAAAAACAAAGCAUAAGCCCAAAAUGACCGAAUGUCGAAUAAAAAUAAAUGCAGCCGCUUCUUCGGCUGCUUCUUCUGGGUCUUCUGCUU ............(((((.(((((((...((((.....)))).............(((((((......)))))))......)))).))).))))) ( -28.50) >DroEre_CAF1 4043 94 + 1 UGACGAAAAACAAAGCAUAAGCCCAAAAUGACCGAAUGUCGAAUAAAAAUAAAUGCAGCCGCUUCUUAUGCUGCUUCUUCUGGGUCUUCUGCUU ............(((((.(((((((...((((.....)))).............(((((..........)))))......)))).))).))))) ( -22.00) >DroAna_CAF1 6024 82 + 1 UAAAAAGAAACAAAGCAUAAGCCCA-AAUGACCGAAUGUCGAAUAAAAAUAAAUGCAGCCGCUUCUU-GGCCGCGUCUUCAAGG---------- ......(((((...((((.......-..((((.....))))...........)))).((.(((....-))).)))).)))....---------- ( -11.55) >consensus UGACGAAAAACAAAGCAUAAGCCCAAAAUGACCGAAUGUCGAAUAAAAAUAAAUGCAGCCGCUUCUUCGGCUGCUUCUUCUGGGUCUUCUGCUU ............(((((.(((((((...((((.....)))).............((((((........))))))......)))).))).))))) (-16.50 = -19.50 + 3.00)
| Location | 8,889,218 – 8,889,312 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -22.65 |
| Energy contribution | -25.53 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8889218 94 - 22224390 AAGCAGAAGACCCAGAAGAAGCAGCCGAAGAAGCGGCUGCAUUUAUUUUUAUUCGACAUUCGGUCAUUUUGGGCUUAUGCUUUGUUUUUCGUCA (((((.(((.(((((((...(((((((......)))))))..............(((.....))).)))))))))).)))))............ ( -33.40) >DroSec_CAF1 4010 94 - 1 AAGCAGAAGACCCAGAAGAAGCAGCCGAAGAAGCGGCUGCAUUUAUUUUUAUUCGACAUUCGGUCAUUUUGGGCUUAUGCUUUGUUUUUCGUCA (((((.(((.(((((((...(((((((......)))))))..............(((.....))).)))))))))).)))))............ ( -33.40) >DroEre_CAF1 4043 94 - 1 AAGCAGAAGACCCAGAAGAAGCAGCAUAAGAAGCGGCUGCAUUUAUUUUUAUUCGACAUUCGGUCAUUUUGGGCUUAUGCUUUGUUUUUCGUCA (((((.(((.(((((((...(((((..........)))))..............(((.....))).)))))))))).)))))............ ( -26.70) >DroAna_CAF1 6024 82 - 1 ----------CCUUGAAGACGCGGCC-AAGAAGCGGCUGCAUUUAUUUUUAUUCGACAUUCGGUCAUU-UGGGCUUAUGCUUUGUUUCUUUUUA ----------.((..(((((((((((-.......)))))).............((.....))))).))-..))..................... ( -18.10) >consensus AAGCAGAAGACCCAGAAGAAGCAGCCGAAGAAGCGGCUGCAUUUAUUUUUAUUCGACAUUCGGUCAUUUUGGGCUUAUGCUUUGUUUUUCGUCA (((((.(((.(((((((...(((((((......)))))))..............(((.....))).)))))))))).)))))............ (-22.65 = -25.53 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:42 2006