Locus 333

Sequence ID X_DroMel_CAF1
Location 1,051,733 – 1,051,827
Length 94
Max. P 0.563291
window505

overview

Window 5

Location 1,051,733 – 1,051,827
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.31
Mean single sequence MFE -33.63
Consensus MFE -21.51
Energy contribution -21.73
Covariance contribution 0.23
Combinations/Pair 1.25
Mean z-score -1.31
Structure conservation index 0.64
SVM decision value 0.06
SVM RNA-class probability 0.563291
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1051733 94 - 22224390
CUCCUGAUAUCCCC--CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCU
(((((((((.((((--((.((....(((((...(((........)))...)))))......))))))(((((....))))))).)).))))))).. ( -30.60)
>DroVir_CAF1 1587 85 - 1
UUCCUGGUAACCGG--CGACAUC------ACCGCCCGCCCCGCUGGGC--UCA-UGAUGCGGCUGUGGCAAAUCGAUUUGCGGCUGCUCCGCAUGC
............((--((.....------..)))).((((....))))--...-..((((((..((.(((((....))))).))....)))))).. ( -28.60)
>DroSec_CAF1 712 94 - 1
CUCCUGAUAUCCUC--CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCACUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA
(((((((.......--.((((((...))..))))..(((((.(..(((............)))..).(((((....))))))).)))))))))).. ( -30.50)
>DroSim_CAF1 1670 96 - 1
CUCCUGACAUCCCAGGGGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCACUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA
(((((((((.(((((((((((((...))..)))))........((((....))))......))))))(((((....)))))...)).))))))).. ( -37.50)
>DroEre_CAF1 715 94 - 1
CUCCUGAUACUCCC--CGUGGCCACUGGCCACACCUGCACCACUAGGACCUUCCGCUUCAUCCUGGGGCAGAUCGAUCUGCGGCUGCUCGGGGACA
..........((((--(((((((...))))))....(((((.((((((............)))))).(((((....))))))).)))..))))).. ( -38.70)
>DroYak_CAF1 2796 94 - 1
CUCCUGAUAUCCCC--CGUGGCCACUGGAUCCUCCGGCACCACUAGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGGGCG
..........((((--((.((((.((((.....)))).....((((((............)))))).(((((....)))))))))...)))))).. ( -35.90)
>consensus
CUCCUGAUAUCCCC__CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA
(((((((..........((((((...................((((((............)))))).(((((....)))))))))))))))))).. (-21.51 = -21.73 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:57 2006