Locus 3327

Sequence ID X_DroMel_CAF1
Location 8,883,858 – 8,883,958
Length 100
Max. P 0.774907
window5447

overview

Window 7

Location 8,883,858 – 8,883,958
Length 100
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 86.23
Mean single sequence MFE -27.10
Consensus MFE -20.14
Energy contribution -19.82
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.74
SVM decision value 0.54
SVM RNA-class probability 0.774907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8883858 100 + 22224390
UCGGCAAUCGUCGAGAAUCGGGUUU-U----------UGUUUCAUAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACUAACAUG----UGGCCCACUUCGUGCUCAAGCACUCAUC
(((((....)))))(((..(((...-.----------......(((..(((.....)))..)))........((((......)----))))))..)))((((....))))..... ( -23.30)
>DroSec_CAF1 14405 100 + 1
UCGGCAAUCGUCGAGAAUCGGGUUUGU----------UGCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUGG---UGGCCCACUUCGUGCUCAAGCACUCAUC
(((((....)))))(((..(((.....----------.(((.--((..(((.....)))..))..)))....(((((.....))---))))))..)))((((....))))..... ( -26.40)
>DroSim_CAF1 14527 103 + 1
UCGGCAAUCGUCGAGAAUCGGGUUUGU----------UGCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUGGUGGUGGCCCACUUCGUGCUCAAGCACUCAUC
(((((....)))))(((..(((((...----------.(((.--((..(((.....)))..))..)))....(((((.....))))).)))))..)))((((....))))..... ( -28.60)
>DroEre_CAF1 12977 104 + 1
UCGGCAAUCGCCGAGAAUCGGGUUUUCGC--UUGA---GCUU--UAUUCUGUUUUUCAGUUUAUCAGUUUUUCAGCUAACGUG----UGGCCCACUUCGUGCCGAAGCACUCAUC
(((((....)))))(((..(((((..(((--...(---(((.--.(..(((.............)))..)...))))...)))----.)))))..)))((((....))))..... ( -28.82)
>DroYak_CAF1 13394 109 + 1
UCGGCAAUUGUCGAGAAGCGGGUUUUUUUUUUUGAUUUGCUU--UAUUCUGCUUUUCAGUUUAUCAGUUUUUCAACCAGCGUG----UGGCCCACUUCGUGCUCAAGCACUCAUC
(((((....)))))((((.(((((.......((((...(((.--((..(((.....)))..))..)))...))))........----.))))).))))((((....))))..... ( -28.39)
>consensus
UCGGCAAUCGUCGAGAAUCGGGUUUGU__________UGCUU__UAUUCUGUUUUUCAGUUUAUCAGUUUUUCCACCAACGUG____UGGCCCACUUCGUGCUCAAGCACUCAUC
(((((....)))))(((..(((((....................((..(((.....)))..))...(((........)))........)))))..)))((((....))))..... (-20.14 = -19.82 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:34 2006