Locus 3325

Sequence ID X_DroMel_CAF1
Location 8,880,340 – 8,880,444
Length 104
Max. P 0.763141
window5441

overview

Window 1

Location 8,880,340 – 8,880,444
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -33.03
Consensus MFE -22.52
Energy contribution -24.06
Covariance contribution 1.53
Combinations/Pair 1.19
Mean z-score -3.19
Structure conservation index 0.68
SVM decision value 0.51
SVM RNA-class probability 0.763141
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8880340 104 - 22224390
CUGAGUUUUCUUUGGCUUCUCGAAUCGGUCAUAG---UCUGAGUUGAAAAUCAAUUACCGUUAAUGUUGGCCCACAUAU----GUGCAUUUGUAC---------AAUGUGGGUUAGCAUU
...........(((..((.((((.((((......---.)))).))))))..)))........(((((((((((((((.(----((((....))))---------)))))))))))))))) ( -33.10)
>DroSec_CAF1 10897 107 - 1
CUGAGUUUUCUUUGGCUUCUCGAAUCGGUCACAGCACUCUGAGUUGAAAAUCAAUUACCGUUAAUGCUGGCCCACAUAU----GUGCAUUUGUAC---------AAUGUGGGUUAGCAUU
..((((...((.(((((.........))))).)).))))..(((((.....)))))......(((((((((((((((.(----((((....))))---------)))))))))))))))) ( -37.40)
>DroSim_CAF1 11014 107 - 1
CUGAGUUUUCUUUGGCUUCUCGAAUCGGUCACAGCACUCUGAGUUGAAAAUCAAUUACCGUUAAUGCUGGCCCACAUAU----GUGCAUUUGUAC---------AAUGUGGGUUAGCAUU
..((((...((.(((((.........))))).)).))))..(((((.....)))))......(((((((((((((((.(----((((....))))---------)))))))))))))))) ( -37.40)
>DroEre_CAF1 9775 104 - 1
GUGAGUUUUCUUUGGCUUCUCGAAUCGGUCACAG---UCUGAGUUGAAAAUCAAUUACCGUUAAUGCUGGCCCACAUAU----GUGCAUUUGUCC---------AAUGUGGGUUAGCAUU
...........(((..((.((((.((((......---.)))).))))))..)))........(((((((((((((((.(----(..(....)..)---------)))))))))))))))) ( -31.70)
>DroYak_CAF1 10761 117 - 1
GUGAGUUUUCUUUGGCUUCUCGAAUCGGUCACAG---UCUGAGUUGAAAAUCAAUUACCGUUAAUGCUGGCCCACAUAUGUAUGUGCAUUUGUACAAUUUUUACAAUGUGGGUUAGCAUU
...........(((..((.((((.((((......---.)))).))))))..)))........(((((((((((((((.(((((((((....))))).....))))))))))))))))))) ( -36.10)
>DroAna_CAF1 14532 93 - 1
CUG-GUCUGCUUUGGUUCCCCGGCUCGGUCACAG---UCUGAGCCGAAAAUCAAUUACCGUUAAUGCUGCUCCACAUAC----CCAGAU----AC---------A------CCUAGCAUU
..(-((.....((((((...((((((((......---.))))))))..))))))..)))...(((((((..........----......----..---------.------..))))))) ( -22.50)
>consensus
CUGAGUUUUCUUUGGCUUCUCGAAUCGGUCACAG___UCUGAGUUGAAAAUCAAUUACCGUUAAUGCUGGCCCACAUAU____GUGCAUUUGUAC_________AAUGUGGGUUAGCAUU
..(((((......))))).((((.((((..........)))).))))...............(((((((((((((((......((((....))))..........))))))))))))))) (-22.52 = -24.06 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:29 2006