| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,879,670 – 8,879,770 |
| Length | 100 |
| Max. P | 0.810784 |
| Location | 8,879,670 – 8,879,770 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.53 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -11.33 |
| Energy contribution | -12.21 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8879670 100 + 22224390 CGGCAGCCAUAAAAGCCAAAAAAAAAAAAAAAGAAAAAACUAAGCUUUUGCUGGCUUAUGUAAGUGAGAUUUAGUUGGCAAGAGUUAAACAAAUUUACGA .(((..........))).........................(((((((((..(((.((.(.....).))..)))..))))))))).............. ( -19.60) >DroSec_CAF1 10234 85 + 1 CACCAGCCAUAAAAGCUUAAAAAAAA--------------UACGCUUUUGCUGGCUUAUGUAAGUGAGAUUUAGUUUGCAAGAGUUAAACAAAUUU-CAA ((..((((((((((((..........--------------...))))))).)))))..))....((((((((.((((((....).)))))))))))-)). ( -20.22) >DroSim_CAF1 10350 85 + 1 CGCCAGCCAUAAAAGCCUUAAAAAAA--------------UACGCUUUUGCUGGCUUAUGUAAGUGAGAUUUAGUUGGCAAGAGUUAAACAAAUUU-CAA .((((((...((((((..........--------------...)))))))))))).........((((((((..(((((....)))))..))))))-)). ( -23.52) >DroEre_CAF1 9107 84 + 1 CGGCAGCCAUAAAAGCGGGC-AAAAA--------------UAAGCUCUUGAAGGCUUAUGUAAGUGAGAUUUAGUUGGCCAGAGCUAAACAAAUUU-CCA ..((.(((.........)))-....(--------------((((((......)))))))))..(.(((((((..(((((....)))))..))))))-)). ( -19.90) >DroYak_CAF1 10064 85 + 1 CGGCAGCCAUAAAAACUGAAAAAAAA--------------UAAGCUUUUGGAGGCUUAUGUAAGUGAGAUUUAGUUGAAGAGAGUUAAACAAAUUU-CCA ...(((.........))).......(--------------(((((((....))))))))....(.(((((((..((((......))))..))))))-)). ( -12.30) >consensus CGGCAGCCAUAAAAGCCGAAAAAAAA______________UAAGCUUUUGCUGGCUUAUGUAAGUGAGAUUUAGUUGGCAAGAGUUAAACAAAUUU_CAA ....((((((((((((...........................))))))).)))))..........((((((..(((((....)))))..)))))).... (-11.33 = -12.21 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:28 2006