Locus 332

Sequence ID X_DroMel_CAF1
Location 1,051,262 – 1,051,374
Length 112
Max. P 0.548682
window504

overview

Window 4

Location 1,051,262 – 1,051,374
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.08
Mean single sequence MFE -33.17
Consensus MFE -20.08
Energy contribution -19.67
Covariance contribution -0.41
Combinations/Pair 1.35
Mean z-score -1.70
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.548682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1051262 112 + 22224390
UUGGCAAUCUGCCGGCGGAUGACCUGGAAUUCAUUAAGGAGCUGGACAAGCAGUUCAAACUGCACGGAAACAAGAUCAAGAUCAAGGUGGAGAGGGAUAAUUCCACGA---GUAG-----
..((..(((((....)))))..))(((((((.(((...((((((......))))))...((.((((....)..(((....)))...))).))...))))))))))...---....----- ( -30.50)
>DroVir_CAF1 302 117 + 1
UUGGCAAUUUGCCCGCCGAUGAUCUGGAGUUCAUCAAGGAGCUAGACAAACAGUUUAAGCUACACGGCAACAAGAUCAAAAUUAAGGUGGAGCGUGAGAAUACGACCA---GCAGUAACG
..(((.....))).((((((((........)))))..(.((((((((.....)))).)))).)..))).................(.(((..((((....)))).)))---.)....... ( -27.70)
>DroGri_CAF1 260 117 + 1
UUGGCAAUUUGCCCGCUGAUGAUCUGGAAUUCAUCAAAGAGCUGGACAAACAGUUCAAGCUGCACGGCAGCAAGAUCAAAAUCAAAGUGGAGCGUGAUAAUUCAACCA---GCAGCAACG
..(((.....))).((((.((((((.............((((((......))))))..(((((...))))).)))))).........(((....(((....))).)))---.)))).... ( -35.40)
>DroMoj_CAF1 264 120 + 1
UUGGCAAUUUGCCCGCUGAUGAUCUGGAGUUCAUCAAGGAGCUGGACAAACAGUUCAAGCUGCACGGCAACAAGAUCAAGAUCAAAGUGGAGCGUGAGAAUACGACCACCAGCAGCAGCA
..(((.....))).((((((((........)))))...((((((......))))))..(((((..(....)..(((....)))...((((..((((....)))).))))..)))))))). ( -39.20)
>DroAna_CAF1 267 112 + 1
UCGGGAAUCUGCCAGCAGAUGACUUGGAAUUUAUUAAGGAACUGGACAAGCAAUUCAAGUUGCACGGAAACAAAAUCAAGAUCAAGGUGGAGAGGGAUAAUUCCACAU---CCAG-----
(((((.(((((....)))))..)))))..............(((((...(((((....)))))..(....)...............((((((........)))))).)---))))----- ( -27.20)
>DroPer_CAF1 5143 112 + 1
UUAGCAACCUGCCCGCUGAUGAUCUGGAGUUCAUCAAGGAGCUGGACAAGCAGUUCAAGCUGCAUGGGGACAAGAUCAAGAUCAAGGUGGAGCGGGACAAUUCCACGG---GUAG-----
.......((((((((((..((((((.((((((.(((.(.((((((((.....)))).)))).).)))))))....)).)))))).))))).)))))............---....----- ( -39.00)
>consensus
UUGGCAAUCUGCCCGCUGAUGAUCUGGAAUUCAUCAAGGAGCUGGACAAACAGUUCAAGCUGCACGGCAACAAGAUCAAGAUCAAGGUGGAGCGGGAUAAUUCCACCA___GCAG_____
..(((.....)))....(((((........)))))...((((((......))))))..(((.((((....)..(((....)))...))).))).((......))................ (-20.08 = -19.67 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:56 2006