| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,850,256 – 8,850,354 |
| Length | 98 |
| Max. P | 0.929564 |
| Location | 8,850,256 – 8,850,354 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.71 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -25.37 |
| Energy contribution | -26.37 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8850256 98 - 22224390 GAGUUUUGUAUGCUAAUUUCGUGUAUGCAAAACUUUGCAAUCCCCAGCGGUCCUCUUGCGAACCGCCAAAUCGAAAGGUUCCGUGGAAUAUAUGU--------AUG (((((((((((((.........)))))))))))))((((.......((((.....))))...((((..((((....))))..))))......)))--------).. ( -27.90) >DroSim_CAF1 82213 98 - 1 GAGUUUUGUAUGCUAAUUUCGUGUAUGCAAAACUUUUCAAUCCCCACCGGUCCUCUUUCGAACCGCCAAAUCGAAAGGUUCCGUGGAAUAUAUGU--------AUG (((((((((((((.........)))))))))))))........((((.((..(.(((((((.........))))))))..)))))).........--------... ( -29.80) >DroEre_CAF1 85212 106 - 1 GAGUUUUGUAUGCUAAUUUCGUGUAUGCAAAACUUUACAAUCCCCACCGGUCCUCUUUGAAUCCACCAAAUCGAAAGGUUCCGUGGGUUAUAUGUAGAUGUGUAUG (((((((((((((.........))))))))))))).........(((..(((..(....(((((((..((((....))))..)))))))....)..)))))).... ( -31.40) >consensus GAGUUUUGUAUGCUAAUUUCGUGUAUGCAAAACUUUACAAUCCCCACCGGUCCUCUUUCGAACCGCCAAAUCGAAAGGUUCCGUGGAAUAUAUGU________AUG (((((((((((((.........)))))))))))))........(((.(((..(.(((((((.........))))))))..)))))).................... (-25.37 = -26.37 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:09 2006