Locus 3311

Sequence ID X_DroMel_CAF1
Location 8,846,966 – 8,847,057
Length 91
Max. P 0.692374
window5416

overview

Window 6

Location 8,846,966 – 8,847,057
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.46
Mean single sequence MFE -38.05
Consensus MFE -26.28
Energy contribution -27.70
Covariance contribution 1.42
Combinations/Pair 1.32
Mean z-score -1.28
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.692374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8846966 91 + 22224390
UACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACCAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GUG-------GU
.((((.(((((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...)))))))))--)).---.))-------)) ( -47.20)
>DroVir_CAF1 133488 83 + 1
CACCAAGUCAUCAGUAGACACCGCCGAUUCGCUCGAGGAAGCCUCCACCAUGGCCACCUGUGGCUCUCCGACGGCAGCCGCUG--------------------
...........(((..(...(((.((....(((..(((..(((........)))..)))..)))....)).)))...)..)))-------------------- ( -21.00)
>DroSim_CAF1 78970 91 + 1
CACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACAAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GUG-------GU
.((((.(((((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...)))))))))--)).---.))-------)) ( -47.30)
>DroEre_CAF1 82088 91 + 1
CACCAAGUCAUCGGUGGACACGGCUGAUUCACUCGACGAGGCCUCGACCAUGGCCACAUGUGGCUCACCCGGAGCCGCCGGUG--GCA---GCG-------GU
.(((..(((((((((((...(((.(((..(((.....(.((((........)))).)..)))..))).)))...)))))))))--)).---..)-------)) ( -41.40)
>DroYak_CAF1 84613 91 + 1
CACCAAGUCAUCGGUGGACACGGCCGAUUCACUGGACGAGGCAUCGACUAUGGCUACGUGUGGCUCGCCCGGUGGCGCCGGUA--GCA---GUG-------GU
.((((.(..(((((((..(((((.(((..(((...(((((.(((.....))).)).))))))..))).)).))).))))))).--.).---.))-------)) ( -33.80)
>DroMoj_CAF1 131612 103 + 1
CACCAAGUCGUCGGUGGACACGGCAGACUCGCUGGACGAAGCCUCCACGAUGGCCACCUGCGGCUCCCCAACGGCCGCCAAUGCGGCAGCUGCGGCAAACGCC
......(((((((.((((...(((....(((.....))).)))))))))))))).....((((((........(((((....)))))))))))(((....))) ( -37.60)
>consensus
CACCAAGUCAUCGGUGGACACGGCUGAUUCACUGGACGAGGCCUCGACCAUGGCCACGUGUGGCUCACCCGGAGCCGCCGGUG__GCA___GUG_______GU
........(((((((((...(((.(((..(((...(((.((((........)))).))))))..))).)))...))))))))).................... (-26.28 = -27.70 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006