Locus 3310

Sequence ID X_DroMel_CAF1
Location 8,846,621 – 8,846,734
Length 113
Max. P 0.762027
window5415

overview

Window 5

Location 8,846,621 – 8,846,734
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.71
Mean single sequence MFE -42.65
Consensus MFE -25.48
Energy contribution -25.52
Covariance contribution 0.04
Combinations/Pair 1.45
Mean z-score -1.52
Structure conservation index 0.60
SVM decision value 0.50
SVM RNA-class probability 0.762027
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8846621 113 - 22224390
CUAAGGGCAGAUGCGGCGG-------CGAAGGAUAAUCCCCAUUGGUUGGACUUAGCGUGAAGGUUAUGCCACAUGGUGUUGUCGGCUGUGGUGGCAACAAGGUGUUGCCAAAAUGCGGC
.............((((((-------((..((.....))((((((((..(((((.......)))))..)))).))))))))))))((((((.(((((((.....)))))))...)))))) ( -38.30)
>DroVir_CAF1 133059 119 - 1
CAAUGGGGAAC-GCAUAGGUCGGAAAUGGUGGAUAAUCGCCAUUGGUCGGCGAGAGGGUGAACGUGAUGCCGCAUGGCGUGGUCGGCUGCGGUGGCAGCAGCGUGUUGCCAAAGUGCGGA
..........(-((((..(((((.(((((((......)))))))..))))).....((..(((((..((((((....((..(....)..))))))))...)))).)..))...))))).. ( -45.90)
>DroGri_CAF1 96151 119 - 1
CAAUGGGGAAC-GCAUAAUCCGGAAAUGGGGGACAGUCGCCAUUGGUUGGCGACAGUGUGAAGGUGAUGCCACAUGGCGUUGUUGGUUGCGGUGGCAACAGGGUGUUGCCAAAGUGCGGC
..........(-((((...((.......(....).(((((((.....)))))))...(..(.((..(((((....)))))..))..)..)))(((((((.....)))))))..))))).. ( -45.80)
>DroWil_CAF1 41213 119 - 1
CGAUGGGAAAU-CCAUGGCUCGGGAAUGGCGGAUAGUCCCCAUUUGUUGGCGAUAAUGUAAAGGUAAUGCUGCACGGUGUUGUUGGCUGUGGUGGUAACAGGGUGUUCCCGAAAUGGGGU
..........(-((((...(((((((((.(.......((((((..((..((((((.(((..((......))..))).))))))..)).)))).))......).))))))))).))))).. ( -38.72)
>DroYak_CAF1 84268 113 - 1
CCAAGGGUAGAUGCGGCGG-------UGAUGGAUAAUCGCCAUUGGUGGGACUCAGCGUGAAGGUGAUGCCACAAGGCGUUGCCGGCUGUGGUGGCAACAAGGUGUUCCCAAAAUGGGGC
(((...........(((((-------(........)))))).....((((((.((((.....((..(((((....)))))..)).)))).).((....))......)))))...)))... ( -41.00)
>DroMoj_CAF1 131150 119 - 1
CAAUGGGAAAC-GCAUAGGUGGGAAAUGGUGGAUAGUCGCCGUUGGUGGGCGACAGCGUGAAGGUGAUGCCACAGGGCGUGGUCGGCUGUGGCGGCAGCAGCGUGUUGCCGAAGUGCGGC
..........(-((((........((((((((....))))))))....(((((((.(((...(.((.(((((((.(.((....)).)))))))).)).).))))))))))...))))).. ( -46.20)
>consensus
CAAUGGGAAAC_GCAUAGGUCGGAAAUGGUGGAUAAUCGCCAUUGGUUGGCGACAGCGUGAAGGUGAUGCCACAUGGCGUUGUCGGCUGUGGUGGCAACAGGGUGUUGCCAAAAUGCGGC
...............................(((((.((((....((.((((.((.(.....).)).))))))..))))))))).((((((.(((((((.....)))))))...)))))) (-25.48 = -25.52 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:07 2006