| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,036,613 – 1,036,706 |
| Length | 93 |
| Max. P | 0.823190 |
| Location | 1,036,613 – 1,036,706 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.74 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -15.13 |
| Energy contribution | -16.38 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1036613 93 - 22224390 A--UCACCACAAGUCAAACAGGCUCAGAUGUCAAGGCCUU---GUU------UUCCUCAUUUUCAGUGGGCUCAUUACGUGAGGCAAGUGGAAA----UGGG--------AAAUGU .--.....(((.....((((((((..(....)..)))).)---)))------((((.((((((((.(.(.(((((...))))).).).))))))----))))--------)).))) ( -26.90) >DroSec_CAF1 8454 93 - 1 A--UCACCACAAGUCAAACAGGCUUAGAUGUCAAGGCCUU---GUU------UUCCUCAUUUCCAGUGGGCUCAUUACGUGAGGCAAGUGGAAA----UGGG--------AAAUGC .--............((((((((((.(....).))))).)---)))------)(((.((((((((.(.(.(((((...))))).).).))))))----))))--------)..... ( -30.80) >DroEre_CAF1 8034 93 - 1 A--UCAGCACAAGUCAAACAGGCUUAGAUGUCAAGGCCUU---GUU------UUCCUCAUUUCCAGUGGGCUCAUUACGUGAGGCAAGUGGAAA----UGGG--------AAAUGU .--.....(((.....(((((((((.(....).))))).)---)))------((((.((((((((.(.(.(((((...))))).).).))))))----))))--------)).))) ( -30.90) >DroWil_CAF1 12002 106 - 1 AACUGAGAGCCAGUUUAACUGGCUCCAAAGUCAAGGCCUUCGUGUUUUUUUGUUCCUCAUUUCCACUGAGCUCAUUACGUU--GCCUGUGAAAAACUGUGGA--------AAAUUC ...((.(((((((.....)))))))))...(((((((...((((......((...((((.......))))..)).))))..--)))).)))...........--------...... ( -25.40) >DroYak_CAF1 8406 91 - 1 ------------GUCAAACAGGCUUCGAUGUCAAGGCCUU---GUU------UUCCUCAUUUCCAGUGGGCUCAUUACGUGAGGCAAGUGGAAA----UGGGAAAAGGGGAAAUGU ------------.......((((((.(....).))))))(---.((------((((.((((((((.(.(.(((((...))))).).).))))))----)))))))).)........ ( -31.60) >DroAna_CAF1 11797 93 - 1 A--UCGCCACAAGUCAAACUGGCUUUGAUGUCAAGGCCUU---GUU------UUCCUCAUUUCCAUUGGGCUCAUUACGUGAGGCAAGUGGAAA----UGGG--------AAAUGC .--.................(((((((....)))))))..---..(------((((.((((((((((.(.(((((...))))).).))))))))----))))--------)))... ( -35.00) >consensus A__UCACCACAAGUCAAACAGGCUUAGAUGUCAAGGCCUU___GUU______UUCCUCAUUUCCAGUGGGCUCAUUACGUGAGGCAAGUGGAAA____UGGG________AAAUGC ....................(((((.(....).)))))...............(((...((((((.(.(.(((((...))))).).).)))))).....))).............. (-15.13 = -16.38 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:55 2006