| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,844,572 – 8,844,666 |
| Length | 94 |
| Max. P | 0.800928 |
| Location | 8,844,572 – 8,844,666 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.19 |
| Mean single sequence MFE | -15.30 |
| Consensus MFE | -10.39 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8844572 94 + 22224390 UCGGUCCUUUGCAAAUUGCAAUUCACAGCGCGAAACUUUUGAUUAAUUAAAAGUAAAAC--AAAAAAAAAAAAAACCCAGAGAGCCGACCAAGAAC- ((((..(((((....((((..........)))).((((((((....)))))))).....--................)))))..))))........- ( -18.50) >DroSec_CAF1 84704 87 + 1 UUGGUGCUUUGCAAAUUGCAAUUCACAGCGCGAAACUUUUGAUUAAUUAAAAGUAAAAC--AAA--------AAACCCAGAGAGCCGACCAAGAACU (((((.(((((....((((..........)))).((((((((....)))))))).....--...--------.....))))).)))))......... ( -15.80) >DroSim_CAF1 76585 87 + 1 UCGCUUCUUUGCAAAUUGCAAUUCACAGCGCGAAACUUUUGAUUAAUUAAAAGUAAAAC--AAA--------AAACCCAGAGAGCCGACCAAGAACU (((.(((((((....((((..........)))).((((((((....)))))))).....--...--------.....))))))).)))......... ( -15.10) >DroEre_CAF1 79621 86 + 1 GCGGUCCUCUGCAAAUUGCAAUUCACAGCGCAAAACUUUUGAUUAAUUAAAAGUAAAAC--AAA--------AAACCCAGAGAGCCAACCAAGAAC- ..((..(((((....((((..........)))).((((((((....)))))))).....--...--------.....)))))..))..........- ( -18.60) >DroWil_CAF1 39161 74 + 1 -----CAUUGGUAAAUUGCAAUUUACAACA-AAAACUUUUGAUUAAUUAAAAGUAAAAGGCAAA---------GAGACAA-------AAAAAGACC- -----..(((((((((....))))))....-...((((((((....))))))))..........---------....)))-------.........- ( -8.10) >DroYak_CAF1 82168 87 + 1 UCGGUCCUUUGCAAAUUGCAAUUCACAGCGCGAAACUUUUGAUUAAUUAAAAGUAAAAC--AAA-------AAAACCCAGAGAGCCAACCAAGAAC- ..((..(((((....((((..........)))).((((((((....)))))))).....--...-------......)))))..))..........- ( -15.70) >consensus UCGGUCCUUUGCAAAUUGCAAUUCACAGCGCGAAACUUUUGAUUAAUUAAAAGUAAAAC__AAA________AAACCCAGAGAGCCGACCAAGAAC_ ..(((.(((((....((((..........)))).((((((((....)))))))).......................))))).)))........... (-10.39 = -11.02 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:06 2006