Locus 3307

Sequence ID X_DroMel_CAF1
Location 8,832,209 – 8,832,320
Length 111
Max. P 0.828101
window5411

overview

Window 1

Location 8,832,209 – 8,832,320
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 97.30
Mean single sequence MFE -24.38
Consensus MFE -21.78
Energy contribution -21.98
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.89
SVM decision value 0.70
SVM RNA-class probability 0.828101
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8832209 111 - 22224390
CCAACAAUUAUGCAGGACAGGCAAUAAAUUGCAAAGCAGCGUGUUGCCCACAGAAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA
..............((((.(((((((..((((...))))..)))))))((((..........(((((......)))))..........))))........))))....... ( -31.15)
>DroSec_CAF1 73099 111 - 1
CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGUGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA
......(((((((((((((.((.......(((...))))).)))))..((((..........(((((......)))))..........)))).))).)))))......... ( -23.16)
>DroSim_CAF1 65340 111 - 1
CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGUGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA
......(((((((((((((.((.......(((...))))).)))))..((((..........(((((......)))))..........)))).))).)))))......... ( -23.16)
>DroEre_CAF1 68743 111 - 1
CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCAGAGAAAAUACAACGCCAGGGAAAUGGCAACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA
..............((((..(((......)))...(((.((((((..(....)..)))))...((((......))))..............).)))....))))....... ( -20.60)
>DroYak_CAF1 69570 111 - 1
CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGUAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUGGUCCAAAACUA
..............((((..(((......)))....((.(((((....((((..........(((((......)))))..........))))))))).))))))....... ( -23.85)
>consensus
CCAACAAUUAUGCAGGACAGGCAAUAAAGUGCAAAGCAGCGUGUUCCCCACAGAAAAUACAACGCCAGGGAAAUGGCGACGAAAUAAAUGUGAUGCGAUAGUCCAAAACUA
..............((((..(((......)))...(((.((((((..(....)..)))))..(((((......))))).............).)))....))))....... (-21.78 = -21.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:03 2006