| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,805,577 – 8,805,684 |
| Length | 107 |
| Max. P | 0.757944 |
| Location | 8,805,577 – 8,805,684 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 93.99 |
| Mean single sequence MFE | -43.88 |
| Consensus MFE | -38.08 |
| Energy contribution | -38.36 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8805577 107 + 22224390 UGG-GGCCAUCAGGCGAUGGCCGUAUCCUGCUGCAUGCCGGGCUAUAAUUAGUCGAUGGUCCCGCCUAACGGCUGCUUGUCGCAUCGGGGAAAG--GCUCUCGCAUUGCA .((-(((((((.((((...((.((.....)).)).)))).(((((....))))))))))))))(((....)))........(((.(((((....--..)))))...))). ( -44.70) >DroSec_CAF1 45695 107 + 1 UGG-GGCCAUCAGGCGAUGGCCGUAUCCUGCUGCAUGCCGGACUAUAAUUAGUCGGUGGUCCCGCCUAACGGCUGCUUGUCUCAUCGGGGAAAG--GCUCUCGCAUUGCA .((-(((((((.((((...((.((.....)).)).)))).(((((....))))))))))))))(((....))).((((.((((....)))).))--))............ ( -44.70) >DroSim_CAF1 39226 107 + 1 UGG-GGCCAUCAGGCGAUGGCCGUAUCCUGCUGCAUGCCGGGCUAUAAUUAGUCGGUGGUCCCGCCUAACGGCUGCUUGUCGCAUCGGGGAAAG--GCUCUCGCAUUGCA .((-(((((((.((((...((.((.....)).)).)))).(((((....))))))))))))))(((....)))........(((.(((((....--..)))))...))). ( -44.10) >DroEre_CAF1 42053 104 + 1 ----GGCCAUCAGGCGAUGGUCGUAUCCUGCUGCAUGCCGGGCUAUAAUUAGUCGGUGGUCCCGCCUACCGGCUGCUUGUCGCAUCGGGGAAAG--UCUGUCGCACUGCA ----......((((((((((.(...((((((.....))(((((.((((.((((((((((......)))))))))).)))).)).)))))))..)--.))))))).))).. ( -40.20) >DroYak_CAF1 43639 110 + 1 GGGUGGCCAUCAGGCGAUGGCCGUAUCCUGCUGCAUGCCCGGCUAUAAUUAGUCGGUGGUCCCGCCUAACGGCUGCUUGUCGCAUCGGGGAAAGGCUCUCUCGCAUUGCA (((((((((((....)))))))..))))....(((((((((((((....)))))))...(((((((....)))(((.....)))...))))...........))).))). ( -45.70) >consensus UGG_GGCCAUCAGGCGAUGGCCGUAUCCUGCUGCAUGCCGGGCUAUAAUUAGUCGGUGGUCCCGCCUAACGGCUGCUUGUCGCAUCGGGGAAAG__GCUCUCGCAUUGCA ....(((((((....)))))))(((...(((.(((.(((((((((....)))))((((....))))...)))))))...........((((.......))))))).))). (-38.08 = -38.36 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:55 2006