Locus 3300

Sequence ID X_DroMel_CAF1
Location 8,801,484 – 8,801,576
Length 92
Max. P 0.592819
window5400

overview

Window 0

Location 8,801,484 – 8,801,576
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 74.30
Mean single sequence MFE -15.67
Consensus MFE -5.57
Energy contribution -6.07
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.36
SVM decision value 0.12
SVM RNA-class probability 0.592819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8801484 92 + 22224390
ACAGCGUAUAAAAUCUAGAGCAAAAUUAAAGCUCGCAGGCGUUGAAG--AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU
.((((((..........((((.........))))....))))))...--...............((..((((((.....))))))..))..... ( -18.24)
>DroSec_CAF1 42226 84 + 1
--------AAAAAUCUAGAGCAAAAUUAAAGCUCGUCGGCGUAGAAG--AAAGUUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAGAUU
--------...(((((.((((.........)))).(((((.......--...))))).......((..((((((.....))))))..))))))) ( -17.60)
>DroSim_CAF1 35246 84 + 1
--------AAAAAUCUGGAGCAAAAUUAAAGCUCGCCGGCGUAGAAG--AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU
--------.....((((((((.........))))(....).))))..--...............((..((((((.....))))))..))..... ( -13.40)
>DroEre_CAF1 37665 92 + 1
ACUGUGUAAAAAAUCAAAAGCAAAGUUAAAGCUGGCAGACGUAAAAA--AAAGAUAAGUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAGAAUU
.((((..............((..(((....))).))...........--...................((((((.....)))))).)))).... ( -13.20)
>DroYak_CAF1 39942 94 + 1
ACUGCGUAAAAAAUCUAAGGCAAAGUUGAAGCUCGCAGGAGUAAAAAAGAAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU
.(((((........((.......))........)))))..........................((..((((((.....))))))..))..... ( -14.79)
>DroAna_CAF1 33505 71 + 1
-----------AUUCUAUUUCAGAAGUGAAGUCCGG----------A--CAGGAUGAAAGUGAGUGGAGCCCGCGGGAAAUAGGAAGCAGAAUU
-----------.(((((((((.........((((..----------.--..))))........((((...))))..)))))))))......... ( -16.80)
>consensus
________AAAAAUCUAGAGCAAAAUUAAAGCUCGCAGGCGUAGAAA__AAAGAUGAAUGAAAGUGAAUCCUGUGGGAAAUAGGAAGCAAAAUU
................................................................((..((((((.....))))))..))..... ( -5.57 =  -6.07 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:53 2006