| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,035,698 – 1,035,803 |
| Length | 105 |
| Max. P | 0.533266 |
| Location | 1,035,698 – 1,035,803 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1035698 105 + 22224390 GAAACCCCGAAAAGAAAAGCAGAAG--------CA------AAAGCAGCUGCAGAUUUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAU-GAAGCUACA ............((((((((((..(--------(.------...))..))))...)))))).....(((....))).((((((((((........)))))).))))....-......... ( -20.60) >DroVir_CAF1 11090 100 + 1 AAAAACCCGAAAA--------------------UAAUAGCAAAAGCAUCUCCAGAUAUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAAGGAAGCUGCA .............--------------------...........(((.((((..............(((....))).((((((((((........)))))).))))....)).)).))). ( -17.70) >DroGri_CAF1 20571 100 + 1 AAAAACUCGAAAA--------------------UAAUAGCAAAAGCAACUGCAGAUAUUCUAUAAAAGCCGAAGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAUAGAAGCUGCA .............--------------------.....((....))....((((...((((((...(((....))).((((((((((........)))))).))))..)))))).)))). ( -21.20) >DroYak_CAF1 7429 111 + 1 GAAAGCCCGAAAAGAAAAGCAGAAG--------CAAAAGCAAAAGCAGCUGCAGAUUUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAU-GAAGCUACA ...(((......((((((((((..(--------(..........))..))))...)))))).....(((....))).((((((((((........)))))).))))....-...)))... ( -21.70) >DroMoj_CAF1 12224 100 + 1 AAAAACCCGAAAA--------------------UAAUAGCAAAAGCAUCUGAAGAUAUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAUGGAAGCUGCA .............--------------------.....(((...(((((....))).((((((...(((....))).((((((((((........)))))).))))..))))))))))). ( -18.60) >DroAna_CAF1 10437 105 + 1 --------------AAAAGCAGUAGCAUCGCAGUAGAAGCAAAAGCAGCUGCAGAUUUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAU-GAAGCUACA --------------.......(((((.(((((((....((....)).))))).....(((......(((....))).((((((((((........)))))).))))))).-)).))))). ( -27.00) >consensus AAAAACCCGAAAA____________________UAAUAGCAAAAGCAGCUGCAGAUAUUCUAUAAAAGCCGAGGCUAACGAGAUUUGAUGAAUUGCAAGUCUUUGUGAAU_GAAGCUACA ...........................................(((....................(((....))).((((((((((........)))))).))))........)))... (-13.08 = -13.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:54 2006