| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,769,382 – 8,769,472 |
| Length | 90 |
| Max. P | 0.645780 |
| Location | 8,769,382 – 8,769,472 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 87.67 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8769382 90 - 22224390 UUCAGCAUCGCUUUUUAAUAAGCCCAAUUUACGUAGUAAACGUAUCACACGCCUUUCAAAUGGCGUAAAGGACUGACGUUUGAAUCGGUU .........((((......))))........((...(((((((.((..(((((........)))))....))...)))))))...))... ( -20.30) >DroSec_CAF1 17079 90 - 1 UUCAGCAUCGCUUUUUAAUAAGCCCAAUUUACGUAGUAAACGUAUCACACGCCUUUCAAAUGGUGUGAAGGACUGACGUUUGAAUUGGUU .........((((......))))((((((((.......(((((.((.((((((........))))))...))...))))))))))))).. ( -22.21) >DroSim_CAF1 18001 90 - 1 UUCAGCAUCGCUUUUUAAUAAGCCCAAUUUACGUAGUAAACGUAUCACACGCCUUUCAAAUGGUGUGAAGGACUGACGUUUGAAUCGGUU .........((((......))))........((...(((((((.((.((((((........))))))...))...)))))))...))... ( -21.50) >DroEre_CAF1 16407 90 - 1 AUCAGCAUUGAUAUUCAAUAACCCCAAUUUACGUAGUAAACGUAUCACACGCAAAUCAAAUGCUGUGAAGGACUGACGUUUGGAUUGGGA ......((((.....))))...(((((((((((((((...(...(((((.(((.......)))))))).).))).))))..)))))))). ( -23.30) >DroYak_CAF1 16859 83 - 1 UUCAGCAUCGCUUUUCAAUAAGCCCAGCUUACGUAGUAAACGUAUCACACGCCUCUCAAAUGGCGUGAAGGACUGACGUGUGG------- .((((....((((......))))((....(((((.....)))))...((((((........))))))..)).)))).......------- ( -22.70) >consensus UUCAGCAUCGCUUUUUAAUAAGCCCAAUUUACGUAGUAAACGUAUCACACGCCUUUCAAAUGGUGUGAAGGACUGACGUUUGAAUCGGUU .((((....((((......))))((....(((((.....)))))...((((((........))))))..)).)))).............. (-16.92 = -17.68 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:47 2006