Locus 3293

Sequence ID X_DroMel_CAF1
Location 8,765,480 – 8,765,579
Length 99
Max. P 0.994550
window5392

overview

Window 2

Location 8,765,480 – 8,765,579
Length 99
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 73.68
Mean single sequence MFE -34.25
Consensus MFE -21.96
Energy contribution -24.50
Covariance contribution 2.54
Combinations/Pair 1.14
Mean z-score -2.54
Structure conservation index 0.64
SVM decision value 2.49
SVM RNA-class probability 0.994550
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8765480 99 - 22224390
GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGGGCCAUCG-CCUAGGCCUAUUUGGAUUGCACAGUGGCGGUCACAAAAGUAGGUU-------UA----UC-U
....((((((((...(((((....)))))..))))))))(((((....)-))))(((((((((.((((((......))))))....)))))))))-------..----..-. ( -38.60)
>DroPse_CAF1 11686 77 - 1
AGACUUGACUGCAG--GCCUCACUGCGACAGCCAGUCAAUGGCCCAUAGGCCUAGGCUUC------AUGCCCCAUGCCCCACACA---------------------------
.((((.(..(((((--......)))))....).))))...((((....))))..(((...------..)))..............--------------------------- ( -21.60)
>DroSec_CAF1 13716 100 - 1
GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGGGGCAUCG-CCUAGGCCUAUUUGGAAUGCACAGUGGCGGUCACACAAGUAGGUU-------CU----UCUU
....((((((((...(((((....)))))..))))))))..((((...)-))).((((((((((...(((......)))......))))))))))-------..----.... ( -33.80)
>DroSim_CAF1 14619 100 - 1
GAACUUGACUGCAACGCCAUCCAAAUGGUUGGCAGUCAAUGAGGCAUCG-CCUAGGCCUAUUUGGAUUGCACAGUGGCGGUCACAAAAGUAGGUU-------CU----CCUU
....((((((((...(((((....)))))..))))))))..((((...)-))).(((((((((.((((((......))))))....)))))))))-------..----.... ( -36.60)
>DroEre_CAF1 12986 110 - 1
GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG-CCUGGGCCUAUUUGGAUUGUACAAUGGCGGUCGCAAAAGUAGGUCGAAACGUACGUUAUA-U
....((((((((...(((((....)))))..)))))))).((((((...-..))))))..((((((((((......)))))).)))).(((.((....)).)))......-. ( -40.60)
>DroYak_CAF1 13004 99 - 1
GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG-CCUAGGCCUAUUUGGUUUGUACAAUGGCGGCCACACAACUAGGUU-------AC----UC-C
.(((((((((((...(((((....)))))..))))))..(((((....(-((((((((.....))))))......)))))))).......)))))-------..----..-. ( -34.30)
>consensus
GAACUUGACUGCAACGCCAUCCAAAUGGCUGGCAGUCAAUGGCCCAUCG_CCUAGGCCUAUUUGGAUUGCACAAUGGCGGUCACAAAAGUAGGUU_______AC____UC_U
....((((((((...(((((....)))))..))))))))...............(((((((((.((((((......))))))....)))))))))................. (-21.96 = -24.50 +   2.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006